Dinucleotide PWMs for MOUSE transcription factors
Model Transcription factor Model length Quality
Consensus Origin wAUC
Best AUC
Benchmark datasets Aligned words TF family TF subfamily MGI EntrezGene UniProt ID UniProt AC Comment
BCL6_MOUSE.H10DI.C Bcl6 mouse.h10di.c direct Bcl6 16 C nndMYbTCYAGKRAhn ChIP-Seq 0.7353697537191268 0.7759557538066195 3 504 More than 3 adjacent zinc finger factors{2.3.3} BCL6 factors{2.3.3.22} 107187 12053 BCL6_MOUSE P41183
CDX4_MOUSE.H10DI.A Cdx4 mouse.h10di.a direct Cdx4 14 A nWRATTTAYKRbhn ChIP-Seq 0.8556649397174473 0.8716569321731612 2 513 HOX-related factors{3.1.1} CDX (Caudal type homeobox){3.1.1.9} 88362 12592 CDX4_MOUSE Q07424
CEBPB_MOUSE.H10DI.A Cebpb mouse.h10di.a direct Cebpb 21 A nnRTKRYGCAAYhnnnnnnnn ChIP-Seq 0.9303774581142188 0.9474797264071769 10 500 C/EBP-related{1.1.8} C/EBP{1.1.8.1} 88373 12608 CEBPB_MOUSE P28033
COE1_MOUSE.H10DI.C Coe1 mouse.h10di.c direct Ebf1 23 C nvndbYCCCWKGGGRvhnnnnnn ChIP-Seq 0.9346269203953789 0.9346269203953789 1 506 Early B-Cell Factor-related factors{6.1.5} EBF1 (COE1){6.1.5.0.1} 95275 13591 COE1_MOUSE Q07802
CRX_MOUSE.H10DI.A Crx mouse.h10di.a direct Crx 18 A nnnnhdvddRGATTAdnn ChIP-Seq 0.862689719482612 0.8724564705431574 2 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 1194883 12951 CRX_MOUSE O54751
CTCF_MOUSE.H10DI.A Ctcf mouse.h10di.a direct Ctcf 23 A nYbdCCAShAGRKGRCRbbvndb ChIP-Seq 0.9828675552675289 0.9954072691558203 35 502 More than 3 adjacent zinc finger factors{2.3.3} CTCF-like factors{2.3.3.50} 109447 13018 CTCF_MOUSE Q61164
E2F4_MOUSE.H10DI.C E2f4 mouse.h10di.c direct E2f4 22 C vvvvddGGCGGGRvnnbvvvvn ChIP-Seq 0.7542100464699116 0.7924096002243018 4 499 E2F-related factors{3.3.2} E2F{3.3.2.1} 103012 104394 E2F4_MOUSE Q8R0K9
ERR2_MOUSE.H10DI.C Err2 mouse.h10di.c direct Esrrb 23 C nndbnbSAAGGTCAnvbnvnvnn ChIP-Seq 0.9683998673745083 0.9683998673745083 1 529 Steroid hormone receptors (NR3){2.1.1} ER-like receptors (NR3A&B){2.1.1.2} 1346832 26380 ERR2_MOUSE Q61539
EVX1_MOUSE.H10DI.C Evx1 mouse.h10di.c direct Evx1 17 C nWRATTKATKRbhhnnn ChIP-Seq 0.8342128522087124 0.8342128522087123 1 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 95461 14028 EVX1_MOUSE P23683
EVX2_MOUSE.H10DI.C Evx2 mouse.h10di.c direct Evx2 15 C nbbTTTATKRYhbbn ChIP-Seq 0.9311654294920892 0.9311654294920892 1 534 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 95462 14029 EVX2_MOUSE P49749
FLI1_MOUSE.H10DI.A Fli1 mouse.h10di.a direct Fli1 23 A nbnnnvvvRCMGGAAGYSvvdbn ChIP-Seq 0.8591646810780967 0.9329776164245106 3 457 Ets-related factors{3.5.2} Ets-like factors{3.5.2.1} 95554 14247 FLI1_MOUSE P26323
FOXA2_MOUSE.H10DI.B Foxa2 mouse.h10di.b direct Foxa2 20 B nnnbhnhTRTTTACWYWdnn ChIP-Seq 0.8643172053579138 0.9346536602102022 2 511 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347476 15376 FOXA2_MOUSE P35583
GATA1_MOUSE.H10DI.A Gata1 mouse.h10di.a direct Gata1 21 A nnbnnnnnndbWGATAASvnn ChIP-Seq 0.8852083950439796 0.9304282739217927 13 515 GATA-type zinc fingers{2.2.1} Two zinc-finger GATA factors{2.2.1.1} 95661 14460 GATA1_MOUSE P17679
GATA2_MOUSE.H10DI.A Gata2 mouse.h10di.a direct Gata2 23 A nnnnnnnnnnnnvvWGATAASvn ChIP-Seq 0.850803462219922 0.9011483742840624 5 501 GATA-type zinc fingers{2.2.1} Two zinc-finger GATA factors{2.2.1.1} 95662 14461 GATA2_MOUSE O09100
GATA3_MOUSE.H10DI.A Gata3 mouse.h10di.a direct Gata3 23 A ndnddndbdnnvAGATAAvddnn ChIP-Seq 0.8287681066183508 0.8462938671120581 2 504 GATA-type zinc fingers{2.2.1} Two zinc-finger GATA factors{2.2.1.1} 95663 14462 GATA3_MOUSE P23772
GFI1B_MOUSE.H10DI.C Gfi1b mouse.h10di.c direct Gfi1b 22 C nRYWSWGATTKvnnnnnnnnnn ChIP-Seq 0.825953473931337 0.825953473931337 1 525 More than 3 adjacent zinc finger factors{2.3.3} GFI1 factors{2.3.3.21} 1276578 14582 GFI1B_MOUSE O70237
JUND_MOUSE.H10DI.C Jund mouse.h10di.c direct Jund 19 C ndnKbhhvdWMTGASTMWn ChIP-Seq 0.8658295450293818 0.8658295450293818 1 501 Jun-related factors{1.1.1} Jun factors{1.1.1.1} 96648 16478 JUND_MOUSE P15066
JUN_MOUSE.H10DI.C Jun mouse.h10di.c direct Jun 22 C nddKddvRvdRTGASWhMnhnn ChIP-Seq 0.860163854352609 0.8601638543526091 1 506 Jun-related factors{1.1.1} Jun factors{1.1.1.1} 96646 16476 JUN_MOUSE P05627
KLF4_MOUSE.H10DI.C Klf4 mouse.h10di.c direct Klf4 22 C nvnnvvndGGGYGKGGYbbnvn ChIP-Seq 0.9287471424912743 0.9287471424912743 1 520 Three-zinc finger Krüppel-related factors{2.3.1} Krüppel-like factors{2.3.1.2} 1342287 16600 KLF4_MOUSE Q60793
MAFK_MOUSE.H10DI.A Mafk mouse.h10di.a direct Mafk 23 A ndWhnTGCTGASTMAKCWnhhnn ChIP-Seq 0.9746003345724599 0.9761741452190391 2 437 Maf-related factors{1.1.3} Small Maf factors{1.1.3.2} 99951 17135 MAFK_MOUSE Q61827
MAX_MOUSE.H10DI.A Max mouse.h10di.a direct Max 23 A nvvCACGTGbhbnbnbnnnnnbn ChIP-Seq 0.8306275995481456 0.8968438650315729 4 514 bHLH-ZIP factors{1.2.6} Myc / Max factors{1.2.6.5} 96921 MAX_MOUSE P28574
MXI1_MOUSE.H10DI.B Mxi1 mouse.h10di.b direct Mxi1 23 B nvvvCAYGTGSvnvvnbvvvnbn ChIP-Seq 0.7838391847178962 0.8008708723194874 2 500 bHLH-ZIP factors{1.2.6} Mad-like factors{1.2.6.7} 97245 17859 MXI1_MOUSE P50540
MYB_MOUSE.H10DI.A Myb mouse.h10di.a direct Myb 22 A nndvdKRCMGTTRvnnnnbnnn ChIP-Seq 0.807545787856477 0.8137724634568896 2 511 Myb/SANT domain factors{3.5.1} Myb-like factors{3.5.1.1} 97249 17863 MYB_MOUSE P06876
MYC_MOUSE.H10DI.A Myc mouse.h10di.a direct Myc 19 A nndvMCACGTGSnvvnnvn ChIP-Seq 0.8562701197561228 0.8929962114698462 3 501 bHLH-ZIP factors{1.2.6} Myc / Max factors{1.2.6.5} 97250 17869 MYC_MOUSE P01108
MYOD1_MOUSE.H10DI.C Myod1 mouse.h10di.c direct Myod1 23 C nnnvCAGCTGYYbbhbbbnnbbn ChIP-Seq 0.9352638874024874 0.9352638874024874 1 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97275 17927 MYOD1_MOUSE P10085
MYOG_MOUSE.H10DI.C Myog mouse.h10di.c direct Myog 22 C nvvvvnRRCAGCTGbndnnnnn ChIP-Seq 0.9402627128393427 0.9402627128393428 1 461 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97276 17928 MYOG_MOUSE P12979
NANOG_MOUSE.H10DI.A Nanog mouse.h10di.a direct Nanog 22 A nbbYWTTvWnWTKYWRAdndnn ChIP-Seq 0.7972551782413955 0.8613327589831379 4 513 NK-related factors{3.1.2} NANOG{3.1.2.12} 1919200 71950 NANOG_MOUSE Q80Z64
NDF1_MOUSE.H10DI.C Ndf1 mouse.h10di.c direct Neurod1 23 C bbvvvvnddRRMAGATGGYnhvv ChIP-Seq 0.9092513609210184 0.9092513609210184 1 731 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1339708 18012 NDF1_MOUSE Q60867
NFYA_MOUSE.H10DI.C Nfya mouse.h10di.c direct Nfya 23 C bdRMvvhhhhvRMMAATSRKARv ChIP-Seq 0.8070458887767631 0.8070458887767631 1 579 Heteromeric CCAAT-binding factors{4.2.1} NF-YA (CP1A, CBF-B){4.2.1.0.1} 97316 18044 NFYA_MOUSE P23708
NR1D1_MOUSE.H10DI.D Nr1d1 mouse.h10di.d direct Nr1d1 23 D nvdddvvnnRGGbCAvdKdbnnn ChIP-Seq 0.7268982058707454 0.7268982058707455 1 513 Thyroid hormone receptor-related factors (NR1){2.1.2} Rev-ErbA (NR1D){2.1.2.3} 2444210 217166 NR1D1_MOUSE Q3UV55
NR5A2_MOUSE.H10DI.A Nr5a2 mouse.h10di.a direct Nr5a2 16 A ndbYCAAGGYCRnnnn ChIP-Seq 0.9128812709810099 0.9197057894990996 2 501 FTZ-F1-related receptors (NR5){2.1.5} LRH-1 (NR5A2){2.1.5.0.2} 1346834 26424 NR5A2_MOUSE P45448
OLIG2_MOUSE.H10DI.B Olig2 mouse.h10di.b direct Olig2 23 B nMCAKCTGbbnnShdbvhbbbnn ChIP-Seq 0.8010924228351114 0.8146213135592371 2 502 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1355331 50913 OLIG2_MOUSE Q9EQW6
PO5F1_MOUSE.H10DI.A Po5f1 mouse.h10di.a direct Pou5f1 19 A nbbYWTTvWhATGCAdRdn ChIP-Seq 0.902146413845935 0.9725630727094943 6 505 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 101893 18999 PO5F1_MOUSE P20263
PPARG_MOUSE.H10DI.A Pparg mouse.h10di.a direct Pparg 23 A nddvnhWbWRKGbbARAGGKbWn ChIP-Seq 0.8358730078031252 0.895069341589453 6 503 Thyroid hormone receptor-related factors (NR1){2.1.2} PPAR (NR1C){2.1.2.5} 97747 19016 PPARG_MOUSE P37238
PRD14_MOUSE.H10DI.C Prd14 mouse.h10di.c direct Prdm14 14 C ndSWTAGRGMMShn ChIP-Seq 0.8016261451947589 0.8016261451947589 1 511 More than 3 adjacent zinc finger factors{2.3.3} unclassified{2.3.3.0} 3588194 383491 PRD14_MOUSE E9Q3T6
REST_MOUSE.H10DI.A Rest mouse.h10di.a direct Rest 23 A bYYWSSRYSdbGGWCAGYKbYhn ChIP-Seq 0.9141971050889611 0.9404404842238376 2 532 Factors with multiple dispersed zinc fingers{2.3.4} unclassified{2.3.4.0} 104897 19712 REST_MOUSE Q8VIG1
RFX1_MOUSE.H10DI.C Rfx1 mouse.h10di.c direct Rfx1 23 C bbbbSbGTTGCCWdGGvvMSvvb ChIP-Seq 0.9000134299663253 0.9000134299663254 1 440 RFX-related factors{3.3.3} RFX1 (EF-C){3.3.3.0.1} 105982 19724 RFX1_MOUSE P48377
RXRA_MOUSE.H10DI.B Rxra mouse.h10di.b direct Rxra 23 B nvdvRGKKSARGGbSWbbbhnvd ChIP-Seq 0.7654882691921001 0.8069879887626238 3 507 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98214 20181 RXRA_MOUSE P28700
RXRG_MOUSE.H10DI.C Rxrg mouse.h10di.c direct Rxrg 23 C vddvdbbvdRAGKTCARGGhYRb ChIP-Seq 0.8616538648421981 0.8616538648421981 1 520 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98216 20183 RXRG_MOUSE P28705
SPI1_MOUSE.H10DI.A Spi1 mouse.h10di.a direct Spi1 23 A nvvWRWKRGGAARTGvvnnnnnn ChIP-Seq 0.9587865003775525 0.9891271635038471 7 500 Ets-related factors{3.5.2} Spi-like factors{3.5.2.5} 98282 20375 SPI1_MOUSE P17433
STA5A_MOUSE.H10DI.A Sta5a mouse.h10di.a direct Stat5a 14 A ndnTTCYTRGAAnn ChIP-Seq 0.9185652920874283 0.961199934260125 6 500 STAT factors{6.2.1} STAT5A{6.2.1.0.5} 103036 20850 STA5A_MOUSE P42230
STA5B_MOUSE.H10DI.C Sta5b mouse.h10di.c direct Stat5b 14 C ndTTCYTRGAAnhn ChIP-Seq 0.9507193214364849 0.9507193214364849 1 503 STAT factors{6.2.1} STAT5B{6.2.1.0.6} 103035 20851 STA5B_MOUSE P42232
STAT1_MOUSE.H10DI.A Stat1 mouse.h10di.a direct Stat1 23 A nbhnYhWYTTCCYbYhbhhhhdn ChIP-Seq 0.7906657931512691 0.818755033918522 6 502 STAT factors{6.2.1} STAT1{6.2.1.0.1} 103063 STAT1_MOUSE P42225
STAT3_MOUSE.H10DI.A Stat3 mouse.h10di.a direct Stat3 18 A nvnbTKMYdGGAAvbvvn ChIP-Seq 0.7798264758952239 0.814932416378456 4 436 STAT factors{6.2.1} STAT3{6.2.1.0.3} 103038 20848 STAT3_MOUSE P42227
STAT4_MOUSE.H10DI.A Stat4 mouse.h10di.a direct Stat4 22 A nvnnnbbnbTTCCYdKMAdnnn ChIP-Seq 0.8592520347735834 0.8744564302186991 2 502 STAT factors{6.2.1} STAT4{6.2.1.0.4} 103062 20849 STAT4_MOUSE P42228
STAT6_MOUSE.H10DI.C Stat6 mouse.h10di.c direct Stat6 20 C nnnnnbTTCYbhRGAAvhnn ChIP-Seq 0.8262492362491791 0.8262492362491792 1 500 STAT factors{6.2.1} STAT6{6.2.1.0.7} 103034 20852 STAT6_MOUSE P52633
TAL1_MOUSE.H10DI.A Tal1 mouse.h10di.a direct Tal1 23 A nnnbbKbnnnnndvWGATAARvn ChIP-Seq 0.920395509856274 0.973788791908167 11 502 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 98480 21349 TAL1_MOUSE P22091
TBX20_MOUSE.H10DI.C Tbx20 mouse.h10di.c direct Tbx20 21 C nnnnnnnvdSTGnTGACAKvn ChIP-Seq 0.8141096795432899 0.8141096795432899 1 502 TBX1-related factors{6.5.3} TBX20{6.5.3.0.5} 1888496 57246 TBX20_MOUSE Q9ES03
TF2L1_MOUSE.H10DI.C Tf2l1 mouse.h10di.c direct Tfcp2l1 23 C nndRdCYRGhhdRARCYRGhhhn ChIP-Seq 0.9573716300086532 0.9573716300086532 1 488 CP2-related factors{6.7.2} CP2-L1 (LBP-9, CRTR-1){6.7.2.0.2} 2444691 81879 TF2L1_MOUSE Q3UNW5
TF65_MOUSE.H10DI.C Tf65 mouse.h10di.c direct Rela 23 C nRGRRWKYCCMndvYKdbnhMMn ChIP-Seq 0.8395047729499199 0.8395047729499199 1 500 NF-kappaB-related factors{6.1.1} NF-kappaB p65 subunit-like factors{6.1.1.2} 103290 19697 TF65_MOUSE Q04207
TFE2_MOUSE.H10DI.A Tfe2 mouse.h10di.a direct Tcf3 23 A ndSCAGSTGbbvbdSbRKvbdbb ChIP-Seq 0.8599612631436858 0.8709568721113843 3 584 E2A-related factors{1.2.1} E2A (TCF-3, ITF-1){1.2.1.0.1} 98510 21423 TFE2_MOUSE P15806
USF2_MOUSE.H10DI.A Usf2 mouse.h10di.a direct Usf2 23 A ndGTCACGTGvbbnvnnbnvnbb ChIP-Seq 0.9803407420232653 0.9899993048469995 2 517 bHLH-ZIP factors{1.2.6} USF factors{1.2.6.2} 99961 22282 USF2_MOUSE Q64705