Model info
Transcription factorSOX17
ModelSOX17_HUMAN.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length18
Quality
D
ConsensusMAMCAAWnhYYATTGTSv
wAUC
Best AUC
Benchmark datasets
Aligned words57
TF familySOX-related factors{4.1.1}
TF subfamilyGroup F{4.1.1.6}
HGNC18122
EntrezGene64321
UniProt IDSOX17_HUMAN
UniProt ACQ9H6I2
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.6591
0.0005 3.8441
0.0001 6.3141
PCM
ACGT
018.48739.4354.5544.554
0245.2318.9012.8980.0
0337.36517.6990.01.967
0421.63235.3980.00.0
0548.2328.7980.00.0
0642.2290.03.00211.799
0714.6970.05.936.433
0811.79916.76815.73212.731
0914.69717.6995.918.734
1014.69720.7010.021.632
113.93340.2631.96710.868
1257.030.00.00.0
130.00.00.057.03
140.00.00.057.03
150.00.057.030.0
160.00.00.057.03
170.040.36611.7994.865
188.92723.2116.0698.824
PWM
ACGT
01-0.4750.974-1.009-1.009
021.108-0.432-1.363-2.715
030.9220.203-2.715-1.635
040.3940.869-2.715-2.715
051.171-0.443-2.715-2.715
061.041-2.715-1.336-0.176
070.028-2.715-0.7930.897
08-0.1760.1520.092-0.105
090.0280.203-0.7930.257
100.0280.352-2.7150.394
11-1.1280.994-1.635-0.251
121.335-2.715-2.715-2.715
13-2.715-2.715-2.7151.335
14-2.715-2.715-2.7151.335
15-2.715-2.7151.335-2.715
16-2.715-2.715-2.7151.335
17-2.7150.997-0.176-0.955
18-0.4290.4610.112-0.44