Model info
| Transcription factor | Rfx2 | ||||||||
| Model | RFX2_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | dGTTGCYMRGSAR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 13 | ||||||||
| TF family | RFX-related factors{3.3.3} | ||||||||
| TF subfamily | RFX2{3.3.3.0.2} | ||||||||
| MGI | 106583 | ||||||||
| EntrezGene | 19725 | ||||||||
| UniProt ID | RFX2_MOUSE | ||||||||
| UniProt AC | P48379 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.776 | 1.557 | 3.589 | 5.078 |
| 02 | 0.0 | 0.677 | 12.323 | 0.0 |
| 03 | 0.948 | 0.0 | 0.0 | 12.052 |
| 04 | 0.0 | 0.0 | 0.677 | 12.323 |
| 05 | 0.0 | 0.948 | 11.375 | 0.677 |
| 06 | 0.0 | 13.0 | 0.0 | 0.0 |
| 07 | 0.0 | 5.417 | 1.083 | 6.5 |
| 08 | 6.906 | 4.063 | 0.677 | 1.354 |
| 09 | 2.438 | 0.0 | 8.802 | 1.76 |
| 10 | 0.0 | 0.677 | 12.323 | 0.0 |
| 11 | 0.0 | 5.552 | 6.094 | 1.354 |
| 12 | 8.802 | 0.0 | 4.198 | 0.0 |
| 13 | 7.786 | 2.099 | 2.776 | 0.339 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.13 | -0.571 | 0.083 | 0.385 |
| 02 | -1.803 | -1.082 | 1.203 | -1.803 |
| 03 | -0.896 | -1.803 | -1.803 | 1.182 |
| 04 | -1.803 | -1.803 | -1.082 | 1.203 |
| 05 | -1.803 | -0.896 | 1.128 | -1.082 |
| 06 | -1.803 | 1.254 | -1.803 | -1.803 |
| 07 | -1.803 | 0.443 | -0.814 | 0.607 |
| 08 | 0.662 | 0.19 | -1.082 | -0.668 |
| 09 | -0.234 | -1.803 | 0.887 | -0.483 |
| 10 | -1.803 | -1.082 | 1.203 | -1.803 |
| 11 | -1.803 | 0.465 | 0.549 | -0.668 |
| 12 | 0.887 | -1.803 | 0.218 | -1.803 |
| 13 | 0.773 | -0.351 | -0.13 | -1.379 |