Model info
| Transcription factor | MESP1 | ||||||||
| Model | MESP1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | nCAGGTGbdnn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 61 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Mesp-like factors{1.2.3.3} | ||||||||
| HGNC | 29658 | ||||||||
| EntrezGene | 55897 | ||||||||
| UniProt ID | MESP1_HUMAN | ||||||||
| UniProt AC | Q9BRJ9 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.25 | 17.25 | 20.25 | 5.25 |
| 02 | 4.5 | 51.5 | 2.5 | 1.5 |
| 03 | 50.0 | 3.0 | 3.0 | 4.0 |
| 04 | 1.5 | 0.5 | 54.5 | 3.5 |
| 05 | 0.0 | 0.0 | 59.0 | 1.0 |
| 06 | 0.25 | 0.25 | 3.25 | 56.25 |
| 07 | 2.25 | 1.25 | 55.25 | 1.25 |
| 08 | 6.25 | 7.25 | 22.25 | 24.25 |
| 09 | 9.75 | 7.75 | 24.75 | 17.75 |
| 10 | 8.5 | 18.5 | 19.5 | 13.5 |
| 11 | 20.5 | 8.5 | 16.5 | 14.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.131 | 0.131 | 0.283 | -0.938 |
| 02 | -1.065 | 1.187 | -1.515 | -1.848 |
| 03 | 1.158 | -1.382 | -1.382 | -1.16 |
| 04 | -1.848 | -2.353 | 1.243 | -1.265 |
| 05 | -2.751 | -2.751 | 1.321 | -2.069 |
| 06 | -2.532 | -2.532 | -1.322 | 1.274 |
| 07 | -1.588 | -1.953 | 1.256 | -1.953 |
| 08 | -0.79 | -0.661 | 0.373 | 0.456 |
| 09 | -0.397 | -0.602 | 0.475 | 0.158 |
| 10 | -0.52 | 0.198 | 0.248 | -0.098 |
| 11 | 0.295 | -0.52 | 0.089 | -0.032 |