Model info
| Transcription factor | Ybx1 | ||||||||
| Model | YBOX1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | bSbSMTTSSYY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 63 | ||||||||
| TF family | Dbp factors{9.1.1} | ||||||||
| TF subfamily | B (DbpB/YB-1-like){9.1.1.2} | ||||||||
| MGI | 99146 | ||||||||
| EntrezGene | 22608 | ||||||||
| UniProt ID | YBOX1_MOUSE | ||||||||
| UniProt AC | P62960 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.344 | 11.704 | 22.176 | 19.656 |
| 02 | 3.808 | 20.496 | 32.76 | 4.816 |
| 03 | 5.6 | 7.728 | 26.04 | 22.512 |
| 04 | 6.72 | 12.432 | 41.72 | 1.008 |
| 05 | 45.752 | 10.08 | 2.016 | 4.032 |
| 06 | 0.0 | 7.336 | 0.0 | 54.544 |
| 07 | 0.0 | 3.024 | 7.28 | 51.576 |
| 08 | 0.0 | 20.832 | 33.376 | 7.672 |
| 09 | 0.896 | 21.056 | 33.376 | 6.552 |
| 10 | 7.168 | 44.184 | 1.008 | 9.52 |
| 11 | 5.04 | 30.408 | 2.912 | 23.52 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.565 | -0.259 | 0.341 | 0.226 |
| 02 | -1.227 | 0.266 | 0.717 | -1.037 |
| 03 | -0.912 | -0.633 | 0.495 | 0.355 |
| 04 | -0.756 | -0.203 | 0.952 | -2.091 |
| 05 | 1.042 | -0.395 | -1.689 | -1.181 |
| 06 | -2.773 | -0.679 | -2.773 | 1.214 |
| 07 | -2.773 | -1.403 | -0.686 | 1.159 |
| 08 | -2.773 | 0.281 | 0.735 | -0.64 |
| 09 | -2.147 | 0.292 | 0.735 | -0.777 |
| 10 | -0.699 | 1.008 | -2.091 | -0.447 |
| 11 | -1.0 | 0.645 | -1.431 | 0.397 |