Model info
| Transcription factor | TBX1 | ||||||||
| Model | TBX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 20 | ||||||||
| Quality | D | ||||||||
| Consensus | RKKbGGGhRGGGGYGGGhdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 4716 | ||||||||
| TF family | TBX1-related factors{6.5.3} | ||||||||
| TF subfamily | TBX1{6.5.3.0.1} | ||||||||
| HGNC | 11592 | ||||||||
| EntrezGene | 6899 | ||||||||
| UniProt ID | TBX1_HUMAN | ||||||||
| UniProt AC | O43435 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 541.0 | 368.0 | 3364.0 | 443.0 |
| 02 | 399.0 | 376.0 | 3451.0 | 490.0 |
| 03 | 316.25 | 375.25 | 3491.25 | 533.25 |
| 04 | 783.75 | 1093.75 | 864.75 | 1973.75 |
| 05 | 305.75 | 237.75 | 3926.75 | 245.75 |
| 06 | 236.5 | 185.5 | 3816.5 | 477.5 |
| 07 | 254.75 | 128.75 | 4104.75 | 227.75 |
| 08 | 907.75 | 1931.75 | 694.75 | 1181.75 |
| 09 | 3779.5 | 186.5 | 519.5 | 230.5 |
| 10 | 84.0 | 72.0 | 4473.0 | 87.0 |
| 11 | 18.0 | 28.0 | 4596.0 | 74.0 |
| 12 | 16.0 | 66.0 | 3554.0 | 1080.0 |
| 13 | 31.25 | 41.25 | 4599.25 | 44.25 |
| 14 | 350.5 | 1036.5 | 233.5 | 3095.5 |
| 15 | 24.5 | 39.5 | 4515.5 | 136.5 |
| 16 | 1004.75 | 19.75 | 3657.75 | 33.75 |
| 17 | 833.25 | 78.25 | 3642.25 | 162.25 |
| 18 | 1126.75 | 1894.75 | 820.75 | 873.75 |
| 19 | 1243.75 | 492.75 | 1610.75 | 1368.75 |
| 20 | 989.5 | 602.5 | 1767.5 | 1356.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.777 | -1.16 | 1.047 | -0.976 |
| 02 | -1.08 | -1.139 | 1.073 | -0.876 |
| 03 | -1.311 | -1.141 | 1.084 | -0.791 |
| 04 | -0.407 | -0.075 | -0.309 | 0.515 |
| 05 | -1.345 | -1.594 | 1.202 | -1.561 |
| 06 | -1.599 | -1.84 | 1.173 | -0.901 |
| 07 | -1.526 | -2.2 | 1.246 | -1.637 |
| 08 | -0.261 | 0.493 | -0.528 | 0.002 |
| 09 | 1.164 | -1.835 | -0.817 | -1.625 |
| 10 | -2.619 | -2.769 | 1.332 | -2.584 |
| 11 | -4.073 | -3.669 | 1.359 | -2.742 |
| 12 | -4.177 | -2.853 | 1.102 | -0.088 |
| 13 | -3.567 | -3.305 | 1.36 | -3.238 |
| 14 | -1.209 | -0.129 | -1.612 | 0.964 |
| 15 | -3.793 | -3.346 | 1.342 | -2.143 |
| 16 | -0.16 | -3.989 | 1.131 | -3.494 |
| 17 | -0.346 | -2.688 | 1.127 | -1.972 |
| 18 | -0.045 | 0.474 | -0.361 | -0.299 |
| 19 | 0.053 | -0.87 | 0.312 | 0.149 |
| 20 | -0.175 | -0.67 | 0.404 | 0.14 |