Model info
| Transcription factor | Sp4 | ||||||||
| Model | SP4_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 24 | ||||||||
| Quality | D | ||||||||
| Consensus | RSRdSSRKGGSSGGSGSGSvGbSv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 23 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
| TF subfamily | Sp1-like factors{2.3.1.1} | ||||||||
| MGI | 107595 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | SP4_MOUSE | ||||||||
| UniProt AC | Q62445 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.932 | 3.801 | 13.476 | 0.785 |
| 02 | 1.005 | 6.911 | 14.073 | 1.005 |
| 03 | 5.906 | 0.0 | 12.942 | 4.147 |
| 04 | 3.77 | 3.016 | 11.058 | 5.152 |
| 05 | 2.01 | 14.199 | 6.785 | 0.0 |
| 06 | 1.005 | 16.209 | 4.775 | 1.005 |
| 07 | 12.314 | 2.89 | 7.791 | 0.0 |
| 08 | 1.005 | 4.021 | 13.822 | 4.147 |
| 09 | 0.0 | 2.01 | 17.215 | 3.77 |
| 10 | 0.0 | 2.01 | 17.969 | 3.016 |
| 11 | 1.005 | 3.895 | 17.089 | 1.005 |
| 12 | 2.01 | 7.162 | 13.822 | 0.0 |
| 13 | 0.0 | 1.131 | 21.864 | 0.0 |
| 14 | 1.005 | 2.01 | 18.848 | 1.131 |
| 15 | 1.005 | 5.026 | 15.958 | 1.005 |
| 16 | 0.0 | 1.005 | 21.99 | 0.0 |
| 17 | 1.759 | 11.058 | 10.178 | 0.0 |
| 18 | 0.0 | 1.005 | 19.853 | 2.136 |
| 19 | 2.136 | 6.031 | 14.827 | 0.0 |
| 20 | 3.895 | 7.037 | 11.058 | 1.005 |
| 21 | 0.0 | 8.293 | 14.702 | 0.0 |
| 22 | 3.016 | 10.681 | 6.157 | 3.141 |
| 23 | 0.0 | 13.948 | 8.042 | 1.005 |
| 24 | 5.435 | 5.058 | 11.215 | 1.288 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.134 | -0.354 | 0.781 | -1.426 |
| 02 | -1.295 | 0.164 | 0.822 | -1.295 |
| 03 | 0.024 | -2.12 | 0.743 | -0.281 |
| 04 | -0.361 | -0.542 | 0.595 | -0.096 |
| 05 | -0.849 | 0.83 | 0.147 | -2.12 |
| 06 | -1.295 | 0.956 | -0.161 | -1.295 |
| 07 | 0.696 | -0.576 | 0.272 | -2.12 |
| 08 | -1.295 | -0.307 | 0.805 | -0.281 |
| 09 | -2.12 | -0.849 | 1.013 | -0.361 |
| 10 | -2.12 | -0.849 | 1.055 | -0.542 |
| 11 | -1.295 | -0.334 | 1.006 | -1.295 |
| 12 | -0.849 | 0.196 | 0.805 | -2.12 |
| 13 | -2.12 | -1.227 | 1.243 | -2.12 |
| 14 | -1.295 | -0.849 | 1.1 | -1.227 |
| 15 | -1.295 | -0.117 | 0.941 | -1.295 |
| 16 | -2.12 | -1.295 | 1.249 | -2.12 |
| 17 | -0.943 | 0.595 | 0.518 | -2.12 |
| 18 | -2.12 | -1.295 | 1.15 | -0.805 |
| 19 | -0.805 | 0.042 | 0.871 | -2.12 |
| 20 | -0.334 | 0.18 | 0.595 | -1.295 |
| 21 | -2.12 | 0.329 | 0.863 | -2.12 |
| 22 | -0.542 | 0.562 | 0.061 | -0.509 |
| 23 | -2.12 | 0.813 | 0.301 | -1.295 |
| 24 | -0.049 | -0.112 | 0.608 | -1.148 |