Model info
| Transcription factor | SP1 | ||||||||
| Model | SP1_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | S | ||||||||
| Consensus | RKGGGMGGRRv | ||||||||
| wAUC | 0.738832172750372 | ||||||||
| Best AUC | 0.7865157006545084 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 3614 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
| TF subfamily | Sp1-like factors{2.3.1.1} | ||||||||
| HGNC | 11205 | ||||||||
| EntrezGene | 6667 | ||||||||
| UniProt ID | SP1_HUMAN | ||||||||
| UniProt AC | P08047 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 682.644 | 443.146 | 2075.655 | 287.211 |
| 02 | 299.888 | 103.743 | 2613.893 | 471.132 |
| 03 | 591.489 | 42.632 | 2845.165 | 9.369 |
| 04 | 7.071 | 45.291 | 3432.885 | 3.409 |
| 05 | 91.309 | 19.154 | 3373.657 | 4.536 |
| 06 | 809.208 | 2246.942 | 61.308 | 371.198 |
| 07 | 120.565 | 42.435 | 3242.156 | 83.5 |
| 08 | 13.725 | 35.858 | 3332.407 | 106.666 |
| 09 | 558.119 | 90.008 | 2694.855 | 145.674 |
| 10 | 264.009 | 254.718 | 2796.881 | 173.049 |
| 11 | 519.46 | 1874.935 | 654.541 | 439.72 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.244 | -0.675 | 0.866 | -1.106 |
| 02 | -1.063 | -2.112 | 1.096 | -0.614 |
| 03 | -0.387 | -2.974 | 1.181 | -4.339 |
| 04 | -4.564 | -2.916 | 1.368 | -5.078 |
| 05 | -2.237 | -3.72 | 1.351 | -4.89 |
| 06 | -0.075 | 0.945 | -2.625 | -0.851 |
| 07 | -1.964 | -2.978 | 1.311 | -2.324 |
| 08 | -4.016 | -3.138 | 1.339 | -2.085 |
| 09 | -0.445 | -2.251 | 1.127 | -1.778 |
| 10 | -1.19 | -1.225 | 1.164 | -1.608 |
| 11 | -0.517 | 0.764 | -0.286 | -0.683 |