Model info
| Transcription factor | Sox3 | ||||||||
| Model | SOX3_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | bSCTTTGTYYb | ||||||||
| wAUC | 0.8639200352740097 | ||||||||
| Best AUC | 0.8639200352740097 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group B{4.1.1.2} | ||||||||
| MGI | 98365 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | SOX3_MOUSE | ||||||||
| UniProt AC | P53784 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 28.005 | 113.665 | 227.38 | 130.949 |
| 02 | 2.067 | 343.421 | 93.266 | 61.246 |
| 03 | 3.812 | 381.405 | 0.0 | 114.783 |
| 04 | 135.151 | 2.979 | 0.966 | 360.904 |
| 05 | 0.0 | 12.138 | 0.936 | 486.926 |
| 06 | 0.0 | 1.016 | 0.0 | 498.984 |
| 07 | 3.93 | 33.966 | 461.209 | 0.895 |
| 08 | 0.903 | 0.927 | 0.0 | 498.17 |
| 09 | 1.059 | 185.958 | 128.928 | 184.054 |
| 10 | 25.843 | 205.241 | 42.801 | 226.115 |
| 11 | 61.34 | 178.455 | 102.904 | 157.302 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.454 | -0.094 | 0.593 | 0.046 |
| 02 | -3.554 | 1.003 | -0.289 | -0.701 |
| 03 | -3.161 | 1.107 | -4.4 | -0.084 |
| 04 | 0.077 | -3.329 | -3.916 | 1.052 |
| 05 | -4.4 | -2.224 | -3.928 | 1.351 |
| 06 | -4.4 | -3.897 | -4.4 | 1.375 |
| 07 | -3.139 | -1.271 | 1.297 | -3.945 |
| 08 | -3.942 | -3.932 | -4.4 | 1.373 |
| 09 | -3.88 | 0.393 | 0.031 | 0.383 |
| 10 | -1.53 | 0.491 | -1.048 | 0.587 |
| 11 | -0.699 | 0.352 | -0.192 | 0.227 |