Model info
| Transcription factor | RXRG | ||||||||
| Model | RXRG_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | B | ||||||||
| Consensus | bGTCAAAGGTCAh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 584 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
| HGNC | 10479 | ||||||||
| EntrezGene | 6258 | ||||||||
| UniProt ID | RXRG_HUMAN | ||||||||
| UniProt AC | P48443 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 102.04 | 102.465 | 345.61 | 102.889 |
| 02 | 0.849 | 0.424 | 571.639 | 80.092 |
| 03 | 4.069 | 9.379 | 50.467 | 589.09 |
| 04 | 3.82 | 583.765 | 13.179 | 52.24 |
| 05 | 653.004 | 0.0 | 0.0 | 0.0 |
| 06 | 594.166 | 2.619 | 47.945 | 8.274 |
| 07 | 633.223 | 0.849 | 18.932 | 0.0 |
| 08 | 0.0 | 0.424 | 651.731 | 0.849 |
| 09 | 0.424 | 0.424 | 596.144 | 56.011 |
| 10 | 9.195 | 11.501 | 15.811 | 616.497 |
| 11 | 2.971 | 561.382 | 49.464 | 39.186 |
| 12 | 605.969 | 3.644 | 42.718 | 0.673 |
| 13 | 190.564 | 215.256 | 67.043 | 180.142 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.464 | -0.46 | 0.745 | -0.456 |
| 02 | -4.201 | -4.39 | 1.246 | -0.702 |
| 03 | -3.367 | -2.707 | -1.152 | 1.276 |
| 04 | -3.411 | 1.267 | -2.411 | -1.119 |
| 05 | 1.379 | -4.622 | -4.622 | -4.622 |
| 06 | 1.285 | -3.661 | -1.202 | -2.813 |
| 07 | 1.348 | -4.201 | -2.082 | -4.622 |
| 08 | -4.622 | -4.39 | 1.377 | -4.201 |
| 09 | -4.39 | -4.39 | 1.288 | -1.051 |
| 10 | -2.724 | -2.531 | -2.247 | 1.322 |
| 11 | -3.581 | 1.228 | -1.172 | -1.396 |
| 12 | 1.304 | -3.444 | -1.313 | -4.275 |
| 13 | 0.153 | 0.274 | -0.876 | 0.098 |