RUNX3_HUMAN.H10DI.C motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

RUNX3

Model

RUNX3_HUMAN.H10DI.C

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

12

Quality

C

Consensus

nbbTGTGGTYWn

wAUC

0.9119485630909621

Best AUC

0.9119485630909621

Benchmark datasets

1

Aligned words

516

TF family

Runt-related factors{6.4.1}

TF subfamily

Runx3 (PEBP2alphaC, CBF-alpha3, AML-2){6.4.1.0.3}

HGNC

10473

EntrezGene

864

UniProt ID

RUNX3_HUMAN

UniProt AC

Q13761

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	7.4241
0.0005	9.8441
0.0001	14.4972

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	14.195	18.767	33.484	32.15	29.86	21.644	3.865	54.433	10.894	22.063	44.416	62.027	16.225	35.958	26.81	73.208
02	7.669	36.242	15.07	12.194	10.04	39.674	3.845	44.873	18.801	44.523	4.934	40.318	5.904	83.583	21.78	110.551
03	6.866	0.0	1.032	34.515	6.858	4.06	2.058	191.047	2.063	0.0	0.0	43.566	3.979	4.212	4.027	195.716
04	0.0	0.0	19.766	0.0	0.0	0.0	8.272	0.0	0.0	0.0	7.118	0.0	0.0	0.953	460.993	2.898
05	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.953	9.993	45.836	0.0	440.321	0.0	0.0	0.0	2.898
06	0.0	0.0	9.993	0.0	0.0	0.0	45.836	0.0	0.0	0.0	0.0	0.0	1.024	0.0	443.147	0.0
07	0.0	0.0	1.024	0.0	0.0	0.0	0.0	0.0	0.0	0.0	497.026	1.949	0.0	0.0	0.0	0.0
08	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	22.004	10.866	465.18	0.0	0.0	0.0	1.949
09	0.0	0.0	0.0	0.0	1.037	1.973	0.0	18.994	0.922	1.956	0.0	7.988	16.93	89.602	43.907	316.69
10	5.85	0.983	6.187	5.869	53.611	2.063	1.994	35.863	19.949	0.956	4.985	18.017	88.478	8.888	38.701	207.605
11	43.83	28.479	71.113	24.467	8.962	0.962	0.962	2.004	12.903	14.221	10.808	13.935	36.131	63.342	74.872	93.008

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	-0.774	-0.502	0.068	0.028	-0.045	-0.362	-2.007	0.55	-1.031	-0.343	0.348	0.679	-0.644	0.139	-0.151	0.844
02	-1.368	0.147	-0.716	-0.922	-1.11	0.236	-2.011	0.358	-0.5	0.35	-1.782	0.252	-1.615	0.976	-0.356	1.255
03	-1.473	-4.4	-3.103	0.098	-1.474	-1.962	-2.56	1.8	-2.558	-4.4	-4.4	0.329	-1.98	-1.928	-1.969	1.824
04	-4.4	-4.4	-0.451	-4.4	-4.4	-4.4	-1.296	-4.4	-4.4	-4.4	-1.439	-4.4	-4.4	-3.161	2.68	-2.265
05	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-3.161	-1.114	0.379	-4.4	2.634	-4.4	-4.4	-4.4	-2.265
06	-4.4	-4.4	-1.114	-4.4	-4.4	-4.4	0.379	-4.4	-4.4	-4.4	-4.4	-4.4	-3.109	-4.4	2.64	-4.4
07	-4.4	-4.4	-3.109	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	2.755	-2.605	-4.4	-4.4	-4.4	-4.4
08	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-0.346	-1.034	2.689	-4.4	-4.4	-4.4	-2.605
09	-4.4	-4.4	-4.4	-4.4	-3.1	-2.595	-4.4	-0.49	-3.184	-2.602	-4.4	-1.329	-0.603	1.045	0.337	2.305
10	-1.624	-3.138	-1.571	-1.621	0.535	-2.558	-2.586	0.136	-0.442	-3.158	-1.773	-0.542	1.033	-1.227	0.211	1.883
11	0.335	-0.092	0.815	-0.241	-1.219	-3.154	-3.154	-2.582	-0.867	-0.773	-1.039	-0.793	0.143	0.7	0.867	1.082