Model info
| Transcription factor | RREB1 | ||||||||
| Model | RREB1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 22 | ||||||||
| Quality | D | ||||||||
| Consensus | dbSKbdGKKGKTGbTKKGKGGd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers{2.3.4} | ||||||||
| TF subfamily | unclassified{2.3.4.0} | ||||||||
| HGNC | 10449 | ||||||||
| EntrezGene | 6239 | ||||||||
| UniProt ID | RREB1_HUMAN | ||||||||
| UniProt AC | Q92766 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.823 | 3.089 | 10.104 | 5.985 |
| 02 | 2.059 | 4.118 | 10.749 | 9.074 |
| 03 | 0.0 | 7.015 | 16.089 | 2.896 |
| 04 | 2.059 | 0.0 | 14.867 | 9.074 |
| 05 | 2.059 | 2.896 | 11.97 | 9.074 |
| 06 | 4.118 | 0.837 | 11.133 | 9.911 |
| 07 | 0.0 | 0.837 | 20.207 | 4.956 |
| 08 | 0.0 | 3.734 | 13.192 | 9.074 |
| 09 | 0.0 | 0.837 | 17.311 | 7.852 |
| 10 | 0.0 | 0.837 | 23.104 | 2.059 |
| 11 | 0.0 | 2.512 | 15.251 | 8.237 |
| 12 | 0.0 | 0.0 | 1.675 | 24.325 |
| 13 | 0.837 | 0.0 | 24.325 | 0.837 |
| 14 | 2.059 | 2.512 | 12.355 | 9.074 |
| 15 | 0.0 | 0.837 | 6.177 | 18.985 |
| 16 | 1.675 | 0.837 | 4.118 | 19.37 |
| 17 | 0.0 | 0.837 | 8.237 | 16.926 |
| 18 | 0.0 | 1.675 | 24.325 | 0.0 |
| 19 | 1.675 | 0.0 | 17.311 | 7.015 |
| 20 | 0.0 | 0.837 | 22.266 | 2.896 |
| 21 | 0.0 | 0.0 | 17.311 | 8.689 |
| 22 | 3.926 | 3.542 | 5.148 | 13.384 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.043 | -0.628 | 0.401 | -0.073 |
| 02 | -0.934 | -0.394 | 0.458 | 0.302 |
| 03 | -2.195 | 0.068 | 0.838 | -0.679 |
| 04 | -0.934 | -2.195 | 0.763 | 0.302 |
| 05 | -0.934 | -0.679 | 0.558 | 0.302 |
| 06 | -0.394 | -1.488 | 0.491 | 0.383 |
| 07 | -2.195 | -1.488 | 1.056 | -0.237 |
| 08 | -2.195 | -0.475 | 0.65 | 0.302 |
| 09 | -2.195 | -1.488 | 0.907 | 0.17 |
| 10 | -2.195 | -1.488 | 1.185 | -0.934 |
| 11 | -2.195 | -0.788 | 0.787 | 0.213 |
| 12 | -2.195 | -2.195 | -1.078 | 1.235 |
| 13 | -1.488 | -2.195 | 1.235 | -1.488 |
| 14 | -0.934 | -0.788 | 0.588 | 0.302 |
| 15 | -2.195 | -1.488 | -0.045 | 0.996 |
| 16 | -1.078 | -1.488 | -0.394 | 1.015 |
| 17 | -2.195 | -1.488 | 0.213 | 0.886 |
| 18 | -2.195 | -1.078 | 1.235 | -2.195 |
| 19 | -1.078 | -2.195 | 0.907 | 0.068 |
| 20 | -2.195 | -1.488 | 1.149 | -0.679 |
| 21 | -2.195 | -2.195 | 0.907 | 0.262 |
| 22 | -0.434 | -0.518 | -0.204 | 0.663 |