Model info
| Transcription factor | Rorc | ||||||||
| Model | RORG_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | nAAWvhAGGTCAG | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 7 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | ROR (NR1F){2.1.2.6} | ||||||||
| MGI | 104856 | ||||||||
| EntrezGene | 19885 | ||||||||
| UniProt ID | RORG_MOUSE | ||||||||
| UniProt AC | P51450 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.467 | 0.287 | 2.123 | 2.123 |
| 02 | 3.787 | 0.0 | 0.0 | 3.213 |
| 03 | 7.0 | 0.0 | 0.0 | 0.0 |
| 04 | 3.787 | 0.0 | 1.033 | 2.18 |
| 05 | 1.033 | 1.033 | 4.934 | 0.0 |
| 06 | 1.033 | 1.033 | 0.0 | 4.934 |
| 07 | 4.016 | 0.0 | 2.984 | 0.0 |
| 08 | 0.0 | 0.0 | 7.0 | 0.0 |
| 09 | 0.0 | 0.0 | 7.0 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 7.0 |
| 11 | 0.0 | 6.197 | 0.0 | 0.803 |
| 12 | 7.0 | 0.0 | 0.0 | 0.0 |
| 13 | 1.32 | 0.287 | 5.107 | 0.287 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.278 | -1.062 | 0.154 | 0.154 |
| 02 | 0.647 | -1.525 | -1.525 | 0.503 |
| 03 | 1.208 | -1.525 | -1.525 | -1.525 |
| 04 | 0.647 | -1.525 | -0.387 | 0.176 |
| 05 | -0.387 | -0.387 | 0.885 | -1.525 |
| 06 | -0.387 | -0.387 | -1.525 | 0.885 |
| 07 | 0.7 | -1.525 | 0.439 | -1.525 |
| 08 | -1.525 | -1.525 | 1.208 | -1.525 |
| 09 | -1.525 | -1.525 | 1.208 | -1.525 |
| 10 | -1.525 | -1.525 | -1.525 | 1.208 |
| 11 | -1.525 | 1.095 | -1.525 | -0.55 |
| 12 | 1.208 | -1.525 | -1.525 | -1.525 |
| 13 | -0.214 | -1.062 | 0.917 | -1.062 |