Model info
| Transcription factor | RFX3 | ||||||||
| Model | RFX3_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | B | ||||||||
| Consensus | bGTTRCCATGGhRn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 772 | ||||||||
| TF family | RFX-related factors{3.3.3} | ||||||||
| TF subfamily | RFX3{3.3.3.0.3} | ||||||||
| HGNC | 9984 | ||||||||
| EntrezGene | 5991 | ||||||||
| UniProt ID | RFX3_HUMAN | ||||||||
| UniProt AC | P48380 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.555 | 198.684 | 229.985 | 152.439 |
| 02 | 0.0 | 0.0 | 654.663 | 0.0 |
| 03 | 0.0 | 0.0 | 0.0 | 654.663 |
| 04 | 45.819 | 5.85 | 0.0 | 602.993 |
| 05 | 218.097 | 2.925 | 399.72 | 33.921 |
| 06 | 0.0 | 583.854 | 0.0 | 70.809 |
| 07 | 0.0 | 517.149 | 0.0 | 137.514 |
| 08 | 653.774 | 0.0 | 0.444 | 0.444 |
| 09 | 4.442 | 0.0 | 36.092 | 614.128 |
| 10 | 68.965 | 0.0 | 585.698 | 0.0 |
| 11 | 44.194 | 0.888 | 609.58 | 0.0 |
| 12 | 78.842 | 182.785 | 47.793 | 345.242 |
| 13 | 384.233 | 0.444 | 196.891 | 73.094 |
| 14 | 363.644 | 96.179 | 96.179 | 98.66 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.788 | 0.192 | 0.337 | -0.07 |
| 02 | -4.625 | -4.625 | 1.379 | -4.625 |
| 03 | -4.625 | -4.625 | -4.625 | 1.379 |
| 04 | -1.248 | -3.097 | -4.625 | 1.297 |
| 05 | 0.285 | -3.593 | 0.887 | -1.537 |
| 06 | -4.625 | 1.265 | -4.625 | -0.825 |
| 07 | -4.625 | 1.144 | -4.625 | -0.172 |
| 08 | 1.378 | -4.625 | -4.382 | -4.382 |
| 09 | -3.305 | -4.625 | -1.478 | 1.315 |
| 10 | -0.851 | -4.625 | 1.268 | -4.625 |
| 11 | -1.283 | -4.188 | 1.308 | -4.625 |
| 12 | -0.72 | 0.109 | -1.207 | 0.741 |
| 13 | 0.848 | -4.382 | 0.183 | -0.794 |
| 14 | 0.793 | -0.525 | -0.525 | -0.5 |