Transcription factor | Rfx2 | ||||||||
Model | RFX2_MOUSE.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 13 | ||||||||
Quality | C | ||||||||
Consensus | dGTTGCYMRGSAR | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 13 | ||||||||
TF family | RFX-related factors{3.3.3} | ||||||||
TF subfamily | RFX2{3.3.3.0.2} | ||||||||
MGI | 106583 | ||||||||
EntrezGene | 19725 | ||||||||
UniProt ID | RFX2_MOUSE | ||||||||
UniProt AC | P48379 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2.776 | 1.557 | 3.589 | 5.078 |
02 | 0.0 | 0.677 | 12.323 | 0.0 |
03 | 0.948 | 0.0 | 0.0 | 12.052 |
04 | 0.0 | 0.0 | 0.677 | 12.323 |
05 | 0.0 | 0.948 | 11.375 | 0.677 |
06 | 0.0 | 13.0 | 0.0 | 0.0 |
07 | 0.0 | 5.417 | 1.083 | 6.5 |
08 | 6.906 | 4.063 | 0.677 | 1.354 |
09 | 2.438 | 0.0 | 8.802 | 1.76 |
10 | 0.0 | 0.677 | 12.323 | 0.0 |
11 | 0.0 | 5.552 | 6.094 | 1.354 |
12 | 8.802 | 0.0 | 4.198 | 0.0 |
13 | 7.786 | 2.099 | 2.776 | 0.339 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.13 | -0.571 | 0.083 | 0.385 |
02 | -1.803 | -1.082 | 1.203 | -1.803 |
03 | -0.896 | -1.803 | -1.803 | 1.182 |
04 | -1.803 | -1.803 | -1.082 | 1.203 |
05 | -1.803 | -0.896 | 1.128 | -1.082 |
06 | -1.803 | 1.254 | -1.803 | -1.803 |
07 | -1.803 | 0.443 | -0.814 | 0.607 |
08 | 0.662 | 0.19 | -1.082 | -0.668 |
09 | -0.234 | -1.803 | 0.887 | -0.483 |
10 | -1.803 | -1.082 | 1.203 | -1.803 |
11 | -1.803 | 0.465 | 0.549 | -0.668 |
12 | 0.887 | -1.803 | 0.218 | -1.803 |
13 | 0.773 | -0.351 | -0.13 | -1.379 |