Model info
Transcription factorRarg
ModelRARG_MOUSE.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length7
Quality
S
ConsensusRAGGTCA
wAUC
Best AUC
Benchmark datasets
Aligned words32
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
MGI97858
EntrezGene19411
UniProt IDRARG_MOUSE
UniProt ACP18911
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.6719
0.0005 5.7756
0.0001 7.4356
PCM
ACGT
018.5934.17515.2730.727
0222.8420.05.9260.0
030.00.028.7680.0
040.00.020.7957.973
050.00.00.028.768
060.028.7680.00.0
0726.7212.0470.00.0
PWM
ACGT
010.161-0.4710.696-1.634
021.081-2.258-0.172-2.258
03-2.258-2.2581.305-2.258
04-2.258-2.2580.9910.093
05-2.258-2.258-2.2581.305
06-2.2581.305-2.258-2.258
071.233-1.023-2.258-2.258