Model info
| Transcription factor | NRL | ||||||||
| Model | NRL_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | YGCTGAYdhdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 805 | ||||||||
| TF family | Maf-related factors{1.1.3} | ||||||||
| TF subfamily | Large Maf factors{1.1.3.1} | ||||||||
| HGNC | 8002 | ||||||||
| EntrezGene | 4901 | ||||||||
| UniProt ID | NRL_HUMAN | ||||||||
| UniProt AC | P54845 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 80.5 | 129.5 | 51.5 | 543.5 |
| 02 | 18.25 | 13.25 | 766.25 | 7.25 |
| 03 | 63.75 | 706.75 | 5.75 | 28.75 |
| 04 | 24.25 | 30.25 | 2.25 | 748.25 |
| 05 | 16.0 | 4.0 | 689.0 | 96.0 |
| 06 | 791.0 | 2.0 | 3.0 | 9.0 |
| 07 | 14.0 | 535.0 | 110.0 | 146.0 |
| 08 | 126.0 | 105.0 | 344.0 | 230.0 |
| 09 | 131.0 | 299.0 | 100.0 | 275.0 |
| 10 | 347.75 | 135.75 | 139.75 | 181.75 |
| 11 | 213.75 | 95.75 | 333.75 | 161.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.904 | -0.436 | -1.339 | 0.988 |
| 02 | -2.321 | -2.61 | 1.331 | -3.124 |
| 03 | -1.132 | 1.25 | -3.308 | -1.898 |
| 04 | -2.058 | -1.85 | -3.946 | 1.307 |
| 05 | -2.441 | -3.577 | 1.225 | -0.731 |
| 06 | 1.363 | -4.012 | -3.771 | -2.945 |
| 07 | -2.561 | 0.973 | -0.597 | -0.318 |
| 08 | -0.463 | -0.643 | 0.533 | 0.133 |
| 09 | -0.425 | 0.393 | -0.691 | 0.31 |
| 10 | 0.543 | -0.39 | -0.361 | -0.101 |
| 11 | 0.06 | -0.734 | 0.503 | -0.216 |