Model info
| Transcription factor | NEUROG2 | ||||||||
| Model | NGN2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | MvCMYMTShYhhh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 271 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors{1.2.3.4} | ||||||||
| HGNC | 13805 | ||||||||
| EntrezGene | 63973 | ||||||||
| UniProt ID | NGN2_HUMAN | ||||||||
| UniProt AC | Q9H2A3 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 162.766 | 41.928 | 40.207 | 26.715 |
| 02 | 103.981 | 119.209 | 31.651 | 16.777 |
| 03 | 25.939 | 231.156 | 7.607 | 6.915 |
| 04 | 205.405 | 48.579 | 9.854 | 7.78 |
| 05 | 15.566 | 42.182 | 6.224 | 207.645 |
| 06 | 213.868 | 32.501 | 7.607 | 17.641 |
| 07 | 2.075 | 77.464 | 0.0 | 192.078 |
| 08 | 9.343 | 62.928 | 190.357 | 8.99 |
| 09 | 27.322 | 79.906 | 26.645 | 137.743 |
| 10 | 10.807 | 96.569 | 5.966 | 158.275 |
| 11 | 70.567 | 41.494 | 29.739 | 129.816 |
| 12 | 61.074 | 107.405 | 25.777 | 77.361 |
| 13 | 75.864 | 79.998 | 24.648 | 91.107 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.862 | -0.47 | -0.51 | -0.902 |
| 02 | 0.419 | 0.554 | -0.74 | -1.338 |
| 03 | -0.93 | 1.211 | -2.04 | -2.12 |
| 04 | 1.093 | -0.327 | -1.818 | -2.021 |
| 05 | -1.407 | -0.464 | -2.207 | 1.104 |
| 06 | 1.133 | -0.715 | -2.04 | -1.292 |
| 07 | -2.993 | 0.129 | -3.901 | 1.027 |
| 08 | -1.864 | -0.075 | 1.018 | -1.898 |
| 09 | -0.881 | 0.16 | -0.905 | 0.697 |
| 10 | -1.736 | 0.346 | -2.241 | 0.835 |
| 11 | 0.038 | -0.48 | -0.8 | 0.638 |
| 12 | -0.104 | 0.451 | -0.936 | 0.128 |
| 13 | 0.109 | 0.161 | -0.979 | 0.289 |