Model info
Transcription factorNFIA
ModelNFIA_HUMAN.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length7
Quality
S
ConsensushYTGGCd
wAUC
0.6432768902833551
Best AUC
0.6735251282008177
Benchmark datasets
Aligned words267
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1A (NF-IA){7.1.2.0.1}
HGNC7784
EntrezGene4774
UniProt IDNFIA_HUMAN
UniProt ACQ12857
CommentModel is applicable to several TFs or complex subunits: NFIA_HUMAN, NFIB_HUMAN, NFIC_HUMAN, NFIX_HUMAN. Secondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4121
0.0005 6.1127
0.0001 6.9484
PCM
ACGT
0166.079104.60942.55651.757
0215.36345.5432.356201.739
031.9460.71713.929248.408
043.4820.0255.276.247
057.6813.38253.4270.512
0614.031234.63312.3933.943
07118.27333.34637.25776.124
PWM
ACGT
01-0.0030.449-0.431-0.241
02-1.395-0.365-2.8921.1
03-3.008-3.467-1.4851.306
04-2.63-3.8811.334-2.181
05-2.009-2.6511.326-3.569
06-1.4781.25-1.591-2.539
070.57-0.666-0.560.136