Transcription factor | MSC | ||||||||
Model | MUSC_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 18 | ||||||||
Quality | D | ||||||||
Consensus | CAGAAGACGGCATACGAb | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 16 | ||||||||
TF family | Tal-related factors{1.2.3} | ||||||||
TF subfamily | Mesp-like factors{1.2.3.3} | ||||||||
HGNC | 7321 | ||||||||
EntrezGene | 9242 | ||||||||
UniProt ID | MUSC_HUMAN | ||||||||
UniProt AC | O60682 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 0.0 | 16.0 | 0.0 | 0.0 |
02 | 16.0 | 0.0 | 0.0 | 0.0 |
03 | 0.0 | 0.0 | 16.0 | 0.0 |
04 | 16.0 | 0.0 | 0.0 | 0.0 |
05 | 16.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 16.0 | 0.0 |
07 | 16.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 16.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 16.0 | 0.0 |
10 | 0.0 | 0.0 | 16.0 | 0.0 |
11 | 0.0 | 16.0 | 0.0 | 0.0 |
12 | 16.0 | 0.0 | 0.0 | 0.0 |
13 | 0.0 | 0.0 | 0.0 | 16.0 |
14 | 16.0 | 0.0 | 0.0 | 0.0 |
15 | 0.0 | 16.0 | 0.0 | 0.0 |
16 | 0.0 | 0.0 | 16.0 | 0.0 |
17 | 16.0 | 0.0 | 0.0 | 0.0 |
18 | 0.0 | 4.0 | 6.0 | 6.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.913 | 1.269 | -1.913 | -1.913 |
02 | 1.269 | -1.913 | -1.913 | -1.913 |
03 | -1.913 | -1.913 | 1.269 | -1.913 |
04 | 1.269 | -1.913 | -1.913 | -1.913 |
05 | 1.269 | -1.913 | -1.913 | -1.913 |
06 | -1.913 | -1.913 | 1.269 | -1.913 |
07 | 1.269 | -1.913 | -1.913 | -1.913 |
08 | -1.913 | 1.269 | -1.913 | -1.913 |
09 | -1.913 | -1.913 | 1.269 | -1.913 |
10 | -1.913 | -1.913 | 1.269 | -1.913 |
11 | -1.913 | 1.269 | -1.913 | -1.913 |
12 | 1.269 | -1.913 | -1.913 | -1.913 |
13 | -1.913 | -1.913 | -1.913 | 1.269 |
14 | 1.269 | -1.913 | -1.913 | -1.913 |
15 | -1.913 | 1.269 | -1.913 | -1.913 |
16 | -1.913 | -1.913 | 1.269 | -1.913 |
17 | 1.269 | -1.913 | -1.913 | -1.913 |
18 | -1.913 | 0.0 | 0.355 | 0.355 |