Model info
| Transcription factor | MGA | ||||||||
| Model | MGAP_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Consensus | RRGTGTKAnWTWTMRC | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 6178 | ||||||||
| TF family | bHLH-ZIP factors{1.2.6}; TBX6-related factors{6.5.5} | ||||||||
| TF subfamily | Mad-like factors{1.2.6.7}; MGA (MAD5){6.5.5.0.2} | ||||||||
| HGNC | 14010 | ||||||||
| EntrezGene | 23269 | ||||||||
| UniProt ID | MGAP_HUMAN | ||||||||
| UniProt AC | Q8IWI9 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4018.25 | 288.25 | 1204.25 | 665.25 |
| 02 | 721.0 | 534.0 | 4585.0 | 336.0 |
| 03 | 87.5 | 126.5 | 5868.5 | 93.5 |
| 04 | 62.5 | 605.5 | 62.5 | 5445.5 |
| 05 | 1.0 | 1.0 | 6173.0 | 1.0 |
| 06 | 150.0 | 467.0 | 70.0 | 5489.0 |
| 07 | 77.0 | 352.0 | 4702.0 | 1045.0 |
| 08 | 5923.0 | 15.0 | 204.0 | 34.0 |
| 09 | 3504.0 | 568.0 | 568.0 | 1536.0 |
| 10 | 2718.0 | 220.0 | 368.0 | 2870.0 |
| 11 | 866.5 | 210.5 | 157.5 | 4941.5 |
| 12 | 610.5 | 497.5 | 237.5 | 4830.5 |
| 13 | 207.0 | 211.0 | 34.0 | 5724.0 |
| 14 | 779.0 | 4764.0 | 416.0 | 217.0 |
| 15 | 4043.0 | 168.0 | 1336.0 | 629.0 |
| 16 | 51.5 | 6008.5 | 42.5 | 73.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.956 | -1.672 | -0.248 | -0.84 |
| 02 | -0.76 | -1.059 | 1.087 | -1.52 |
| 03 | -2.847 | -2.486 | 1.334 | -2.783 |
| 04 | -3.174 | -0.934 | -3.174 | 1.259 |
| 05 | -6.186 | -6.186 | 1.385 | -6.186 |
| 06 | -2.318 | -1.193 | -3.064 | 1.267 |
| 07 | -2.972 | -1.474 | 1.113 | -0.39 |
| 08 | 1.343 | -4.5 | -2.015 | -3.755 |
| 09 | 0.819 | -0.998 | -0.998 | -0.005 |
| 10 | 0.565 | -1.94 | -1.43 | 0.619 |
| 11 | -0.577 | -1.984 | -2.27 | 1.162 |
| 12 | -0.926 | -1.13 | -1.864 | 1.14 |
| 13 | -2.0 | -1.981 | -3.755 | 1.309 |
| 14 | -0.683 | 1.126 | -1.308 | -1.954 |
| 15 | 0.962 | -2.207 | -0.144 | -0.896 |
| 16 | -3.36 | 1.358 | -3.544 | -3.017 |