Model info
Transcription factorLhx2
ModelLHX2_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length13
Quality
D
ConsensushdnWTKTAATWAS
wAUC
Best AUC
Benchmark datasets
Aligned words7
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-2-like factors{3.1.5.3}
MGI96785
EntrezGene16870
UniProt IDLHX2_MOUSE
UniProt ACQ9Z0S2
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9601
0.0005 5.5891
0.0001 6.8681
PCM
ACGT
011.2913.2420.2582.209
023.2130.8032.0660.918
031.0332.9841.9511.033
042.180.01.9512.869
051.0330.00.05.967
061.0330.01.9514.016
070.03.0980.03.902
087.00.00.00.0
097.00.00.00.0
100.00.00.07.0
112.0660.00.8034.131
124.9340.02.0660.0
130.5161.4344.5330.516
PWM
ACGT
01-0.230.511-1.10.187
020.503-0.550.132-0.465
03-0.3870.4390.086-0.387
040.176-1.5250.0860.406
05-0.387-1.525-1.5251.06
06-0.387-1.5250.0860.7
07-1.5250.472-1.5250.674
081.208-1.525-1.525-1.525
091.208-1.525-1.525-1.525
10-1.525-1.525-1.5251.208
110.132-1.525-0.550.725
120.885-1.5250.132-1.525
13-0.802-0.1520.808-0.802