Model info
| Transcription factor | Hoxb1 | ||||||||
| Model | HXB1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Consensus | WGATGGATGG | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 15 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX1{3.1.1.1} | ||||||||
| MGI | 96182 | ||||||||
| EntrezGene | 15407 | ||||||||
| UniProt ID | HXB1_MOUSE | ||||||||
| UniProt AC | P17919 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.571 | 0.0 | 1.016 | 9.254 |
| 02 | 0.0 | 0.0 | 14.84 | 0.0 |
| 03 | 14.84 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 14.84 |
| 05 | 0.0 | 0.0 | 9.254 | 5.586 |
| 06 | 0.0 | 0.0 | 14.84 | 0.0 |
| 07 | 14.84 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 14.84 |
| 09 | 0.0 | 2.539 | 12.301 | 0.0 |
| 10 | 1.016 | 1.016 | 12.809 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.179 | -1.872 | -0.953 | 0.817 |
| 02 | -1.872 | -1.872 | 1.264 | -1.872 |
| 03 | 1.264 | -1.872 | -1.872 | -1.872 |
| 04 | -1.872 | -1.872 | -1.872 | 1.264 |
| 05 | -1.872 | -1.872 | 0.817 | 0.356 |
| 06 | -1.872 | -1.872 | 1.264 | -1.872 |
| 07 | 1.264 | -1.872 | -1.872 | -1.872 |
| 08 | -1.872 | -1.872 | -1.872 | 1.264 |
| 09 | -1.872 | -0.311 | 1.085 | -1.872 |
| 10 | -0.953 | -0.953 | 1.123 | -1.872 |