Model info
Transcription factorGATA6
ModelGATA6_HUMAN.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length7
Quality
S
ConsensusnhGATAR
wAUC
0.7950883436789035
Best AUC
0.848043185473239
Benchmark datasets2
Aligned words115
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
HGNC4174
EntrezGene2627
UniProt IDGATA6_HUMAN
UniProt ACQ92908
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.3003
0.0005 5.862
0.0001 6.6928
PCM
ACGT
0130.28626.99626.99629.719
0257.05512.3647.2637.319
031.0210.0112.9760.0
04111.9561.1340.00.907
050.9070.00.907112.182
0680.4220.01.02132.554
0774.46711.62717.29810.606
PWM
ACGT
010.058-0.052-0.0520.04
020.674-0.784-1.2570.26
03-2.6-3.2221.347-3.222
041.338-2.55-3.222-2.653
05-2.653-3.222-2.6531.34
061.011-3.222-2.60.128
070.936-0.84-0.474-0.923