Model info
| Transcription factor | GABPB1 | ||||||||
| Model | GABP1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Consensus | SCGGAAGbdv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 36 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | 4074 | ||||||||
| EntrezGene | 2553 | ||||||||
| UniProt ID | GABP1_HUMAN | ||||||||
| UniProt AC | Q06547 | ||||||||
| Comment | Model is applicable to several TFs or complex subunits: GABP1_HUMAN, GABP2_HUMAN. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.399 | 20.87 | 7.714 | 1.017 |
| 02 | 9.09 | 26.91 | 0.0 | 0.0 |
| 03 | 0.957 | 0.0 | 35.043 | 0.0 |
| 04 | 0.0 | 0.0 | 36.0 | 0.0 |
| 05 | 35.043 | 0.0 | 0.957 | 0.0 |
| 06 | 33.967 | 0.0 | 0.0 | 2.033 |
| 07 | 7.654 | 0.0 | 28.346 | 0.0 |
| 08 | 3.588 | 3.827 | 8.492 | 20.093 |
| 09 | 5.502 | 4.784 | 19.734 | 5.98 |
| 10 | 12.618 | 8.91 | 12.498 | 1.973 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.305 | 0.788 | -0.139 | -1.644 |
| 02 | 0.009 | 1.033 | -2.402 | -2.402 |
| 03 | -1.675 | -2.402 | 1.29 | -2.402 |
| 04 | -2.402 | -2.402 | 1.316 | -2.402 |
| 05 | 1.29 | -2.402 | -1.675 | -2.402 |
| 06 | 1.259 | -2.402 | -2.402 | -1.217 |
| 07 | -0.146 | -2.402 | 1.083 | -2.402 |
| 08 | -0.792 | -0.74 | -0.053 | 0.752 |
| 09 | -0.436 | -0.555 | 0.735 | -0.364 |
| 10 | 0.312 | -0.009 | 0.303 | -1.238 |