Model info
| Transcription factor | EMX2 | ||||||||
| Model | EMX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Consensus | TAATTARbdhhh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 36122 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | EMX{3.1.2.6} | ||||||||
| HGNC | 3341 | ||||||||
| EntrezGene | 2018 | ||||||||
| UniProt ID | EMX2_HUMAN | ||||||||
| UniProt AC | Q04743 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 786.25 | 3718.25 | 551.25 | 30764.25 |
| 02 | 30399.75 | 4363.75 | 495.75 | 560.75 |
| 03 | 35357.0 | 188.0 | 128.0 | 147.0 |
| 04 | 53.25 | 15.25 | 75.25 | 35676.25 |
| 05 | 45.25 | 45.25 | 195.25 | 35534.25 |
| 06 | 35512.5 | 23.5 | 201.5 | 82.5 |
| 07 | 9592.5 | 4778.5 | 20966.5 | 482.5 |
| 08 | 1229.0 | 14096.0 | 7005.0 | 13490.0 |
| 09 | 7266.25 | 5437.25 | 8730.25 | 14386.25 |
| 10 | 15905.0 | 5515.0 | 4157.0 | 10243.0 |
| 11 | 18948.25 | 4455.25 | 3508.25 | 8908.25 |
| 12 | 11934.75 | 4477.75 | 3587.75 | 15819.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.43 | -0.879 | -2.783 | 1.234 |
| 02 | 1.222 | -0.719 | -2.889 | -2.766 |
| 03 | 1.373 | -3.85 | -4.228 | -4.092 |
| 04 | -5.077 | -6.217 | -4.745 | 1.382 |
| 05 | -5.232 | -5.232 | -3.813 | 1.378 |
| 06 | 1.377 | -5.837 | -3.782 | -4.656 |
| 07 | 0.069 | -0.628 | 0.851 | -2.916 |
| 08 | -1.984 | 0.454 | -0.246 | 0.41 |
| 09 | -0.209 | -0.499 | -0.025 | 0.474 |
| 10 | 0.574 | -0.485 | -0.767 | 0.134 |
| 11 | 0.749 | -0.698 | -0.937 | -0.005 |
| 12 | 0.287 | -0.693 | -0.914 | 0.569 |