Model info
| Transcription factor | Ctcf | ||||||||
| Model | CTCF_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Consensus | hbRCCRShAGGKGGCGSbvb | ||||||||
| wAUC | 0.9771765471040378 | ||||||||
| Best AUC | 0.9973538813149299 | ||||||||
| Benchmark datasets | 35 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | CTCF-like factors{2.3.3.50} | ||||||||
| MGI | 109447 | ||||||||
| EntrezGene | 13018 | ||||||||
| UniProt ID | CTCF_MOUSE | ||||||||
| UniProt AC | Q61164 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 50.309 | 201.523 | 46.22 | 201.949 |
| 02 | 62.495 | 86.597 | 261.485 | 89.423 |
| 03 | 114.79 | 37.813 | 288.531 | 58.866 |
| 04 | 25.288 | 429.299 | 26.83 | 18.583 |
| 05 | 4.384 | 487.157 | 5.607 | 2.851 |
| 06 | 332.66 | 10.766 | 114.237 | 42.336 |
| 07 | 13.371 | 295.835 | 186.748 | 4.045 |
| 08 | 73.172 | 248.866 | 34.771 | 143.191 |
| 09 | 453.065 | 20.127 | 17.133 | 9.675 |
| 10 | 1.2 | 0.0 | 497.692 | 1.108 |
| 11 | 158.327 | 1.133 | 339.321 | 1.218 |
| 12 | 22.179 | 16.821 | 342.868 | 118.132 |
| 13 | 0.0 | 2.544 | 494.568 | 2.888 |
| 14 | 17.644 | 13.384 | 444.172 | 24.801 |
| 15 | 32.816 | 440.034 | 0.848 | 26.301 |
| 16 | 146.444 | 3.486 | 345.514 | 4.555 |
| 17 | 34.118 | 310.868 | 130.378 | 24.635 |
| 18 | 59.718 | 185.632 | 63.529 | 191.121 |
| 19 | 153.791 | 145.893 | 174.758 | 25.558 |
| 20 | 58.331 | 116.047 | 175.429 | 150.193 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.892 | 0.473 | -0.974 | 0.475 |
| 02 | -0.681 | -0.362 | 0.732 | -0.33 |
| 03 | -0.084 | -1.168 | 0.83 | -0.739 |
| 04 | -1.551 | 1.225 | -1.495 | -1.838 |
| 05 | -3.059 | 1.351 | -2.872 | -3.358 |
| 06 | 0.971 | -2.329 | -0.089 | -1.059 |
| 07 | -2.138 | 0.854 | 0.397 | -3.118 |
| 08 | -0.527 | 0.682 | -1.248 | 0.134 |
| 09 | 1.279 | -1.764 | -1.913 | -2.422 |
| 10 | -3.828 | -4.4 | 1.372 | -3.862 |
| 11 | 0.234 | -3.852 | 0.991 | -3.821 |
| 12 | -1.674 | -1.93 | 1.001 | -0.056 |
| 13 | -4.4 | -3.43 | 1.366 | -3.35 |
| 14 | -1.886 | -2.137 | 1.259 | -1.569 |
| 15 | -1.303 | 1.25 | -3.964 | -1.514 |
| 16 | 0.157 | -3.223 | 1.009 | -3.031 |
| 17 | -1.266 | 0.904 | 0.042 | -1.575 |
| 18 | -0.725 | 0.391 | -0.665 | 0.42 |
| 19 | 0.205 | 0.153 | 0.332 | -1.541 |
| 20 | -0.748 | -0.073 | 0.335 | 0.182 |