Model info
| Transcription factor | TFAP2A | ||||||||
| Model | AP2A_HUMAN.H10DI.B | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | B | ||||||||
| Consensus | ndhnGCCYGRGGCndhn | ||||||||
| wAUC | 0.9432456177859184 | ||||||||
| Best AUC | 0.9432456177859185 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 1119 | ||||||||
| TF family | AP-2{1.3.1} | ||||||||
| TF subfamily | AP-2alpha{1.3.1.0.1} | ||||||||
| HGNC | 11742 | ||||||||
| EntrezGene | 7020 | ||||||||
| UniProt ID | AP2A_HUMAN | ||||||||
| UniProt AC | P05549 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 183.75 | 35.5 | 43.75 | 58.75 | 131.75 | 39.5 | 55.75 | 37.75 | 99.75 | 29.5 | 36.75 | 40.75 | 143.75 | 35.5 | 58.75 | 87.75 |
| 02 | 56.5 | 89.0 | 57.5 | 356.0 | 25.5 | 21.0 | 19.5 | 74.0 | 24.5 | 21.0 | 26.5 | 123.0 | 47.5 | 32.0 | 31.5 | 114.0 |
| 03 | 14.688 | 70.938 | 33.438 | 34.938 | 22.688 | 67.938 | 34.438 | 37.938 | 15.688 | 47.938 | 15.438 | 55.938 | 182.688 | 131.938 | 268.438 | 83.938 |
| 04 | 0.063 | 43.063 | 192.563 | 0.063 | 1.063 | 39.063 | 278.563 | 0.063 | 2.063 | 277.063 | 72.563 | 0.063 | 0.063 | 3.063 | 209.563 | 0.063 |
| 05 | 0.0 | 3.25 | 0.0 | 0.0 | 0.0 | 362.25 | 0.0 | 0.0 | 0.0 | 751.25 | 2.0 | 0.0 | 0.0 | 0.25 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1099.0 | 2.0 | 16.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 250.0 | 68.0 | 777.0 | 0.0 | 1.0 | 0.0 | 3.0 | 0.0 | 5.0 | 5.0 | 6.0 |
| 08 | 0.0 | 0.0 | 4.0 | 0.0 | 12.0 | 0.0 | 244.0 | 0.0 | 1.0 | 0.0 | 72.0 | 0.0 | 114.0 | 0.0 | 672.0 | 0.0 |
| 09 | 101.0 | 5.0 | 21.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 545.0 | 128.0 | 319.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 10 | 12.0 | 0.0 | 634.0 | 0.0 | 1.0 | 0.0 | 132.0 | 0.0 | 6.0 | 0.0 | 334.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 11 | 0.0 | 0.0 | 19.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1100.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 12 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 714.0 | 399.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 13 | 0.0 | 3.0 | 0.0 | 0.0 | 176.5 | 58.5 | 314.5 | 164.5 | 10.5 | 300.5 | 51.5 | 36.5 | 0.0 | 0.0 | 3.0 | 0.0 |
| 14 | 81.5 | 29.5 | 36.5 | 39.5 | 281.25 | 17.25 | 28.25 | 35.25 | 136.0 | 48.0 | 91.0 | 94.0 | 157.0 | 9.0 | 21.0 | 14.0 |
| 15 | 113.688 | 109.688 | 60.688 | 371.688 | 22.938 | 23.938 | 13.938 | 42.938 | 28.688 | 24.688 | 23.688 | 99.688 | 42.938 | 26.938 | 23.938 | 88.938 |
| 16 | 80.313 | 30.313 | 36.313 | 61.313 | 52.813 | 27.813 | 57.813 | 46.813 | 29.813 | 21.813 | 36.813 | 33.813 | 163.563 | 90.563 | 155.563 | 193.563 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.962 | -0.672 | -0.465 | -0.173 | 0.63 | -0.567 | -0.225 | -0.611 | 0.353 | -0.855 | -0.638 | -0.536 | 0.717 | -0.672 | -0.173 | 0.226 |
| 02 | -0.212 | 0.24 | -0.194 | 1.622 | -0.998 | -1.189 | -1.261 | 0.056 | -1.037 | -1.189 | -0.96 | 0.562 | -0.384 | -0.775 | -0.79 | 0.486 |
| 03 | -1.537 | 0.014 | -0.731 | -0.688 | -1.113 | -0.029 | -0.702 | -0.606 | -1.473 | -0.375 | -1.489 | -0.222 | 0.956 | 0.632 | 1.34 | 0.181 |
| 04 | -4.944 | -0.481 | 1.009 | -4.944 | -3.848 | -0.578 | 1.377 | -4.944 | -3.337 | 1.372 | 0.037 | -4.944 | -4.944 | -3.001 | 1.093 | -4.944 |
| 05 | -5.078 | -2.949 | -5.078 | -5.078 | -5.078 | 1.64 | -5.078 | -5.078 | -5.078 | 2.368 | -3.362 | -5.078 | -5.078 | -4.627 | -5.078 | -5.078 |
| 06 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | 2.749 | -3.362 | -1.454 | -5.078 | -5.078 | -3.362 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 |
| 07 | -5.078 | -5.078 | -5.078 | -5.078 | -2.763 | 1.269 | -0.028 | 2.402 | -5.078 | -3.89 | -5.078 | -3.019 | -5.078 | -2.56 | -2.56 | -2.392 |
| 08 | -5.078 | -5.078 | -2.763 | -5.078 | -1.733 | -5.078 | 1.245 | -5.078 | -3.89 | -5.078 | 0.029 | -5.078 | 0.486 | -5.078 | 2.257 | -5.078 |
| 09 | 0.366 | -2.56 | -1.189 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | 2.048 | 0.602 | 1.513 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 |
| 10 | -1.733 | -5.078 | 2.199 | -5.078 | -3.89 | -5.078 | 0.632 | -5.078 | -2.392 | -5.078 | 1.559 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 |
| 11 | -5.078 | -5.078 | -1.287 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | 2.75 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 |
| 12 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | -5.078 | -3.019 | 2.318 | 1.736 | -3.019 | -5.078 | -5.078 | -5.078 | -5.078 |
| 13 | -5.078 | -3.019 | -5.078 | -5.078 | 0.922 | -0.177 | 1.499 | 0.852 | -1.862 | 1.453 | -0.304 | -0.645 | -5.078 | -5.078 | -3.019 | -5.078 |
| 14 | 0.152 | -0.855 | -0.645 | -0.567 | 1.387 | -1.381 | -0.897 | -0.679 | 0.662 | -0.374 | 0.262 | 0.294 | 0.805 | -2.009 | -1.189 | -1.584 |
| 15 | 0.483 | 0.448 | -0.141 | 1.665 | -1.102 | -1.06 | -1.588 | -0.484 | -0.882 | -1.03 | -1.071 | 0.353 | -0.484 | -0.944 | -1.06 | 0.239 |
| 16 | 0.138 | -0.828 | -0.65 | -0.131 | -0.279 | -0.913 | -0.189 | -0.398 | -0.844 | -1.151 | -0.636 | -0.72 | 0.846 | 0.257 | 0.796 | 1.014 |