Model info
| Transcription factor | VENTX | ||||||||
| Model | VENTX_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Consensus | bvYTAATYRbYhhhhhWWd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 9943 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | VENTX{3.1.2.23} | ||||||||
| HGNC | 13639 | ||||||||
| EntrezGene | 27287 | ||||||||
| UniProt ID | VENTX_HUMAN | ||||||||
| UniProt AC | O95231 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1475.0 | 4050.0 | 1808.0 | 2610.0 |
| 02 | 2365.5 | 2652.5 | 3942.5 | 982.5 |
| 03 | 649.5 | 5322.5 | 453.5 | 3517.5 |
| 04 | 87.25 | 255.25 | 71.25 | 9529.25 |
| 05 | 9452.75 | 338.75 | 19.75 | 131.75 |
| 06 | 9608.75 | 284.75 | 8.75 | 40.75 |
| 07 | 17.75 | 195.75 | 25.75 | 9703.75 |
| 08 | 70.25 | 3826.25 | 1477.25 | 4569.25 |
| 09 | 2882.25 | 390.25 | 6206.25 | 464.25 |
| 10 | 1059.0 | 3408.0 | 3717.0 | 1759.0 |
| 11 | 1010.25 | 2593.25 | 455.25 | 5884.25 |
| 12 | 1583.75 | 2448.75 | 931.75 | 4978.75 |
| 13 | 2302.75 | 2850.75 | 1028.75 | 3760.75 |
| 14 | 2034.5 | 3699.5 | 824.5 | 3384.5 |
| 15 | 2636.0 | 3211.0 | 529.0 | 3567.0 |
| 16 | 4623.25 | 1500.25 | 1127.25 | 2692.25 |
| 17 | 5446.75 | 598.75 | 435.75 | 3461.75 |
| 18 | 2075.5 | 748.5 | 714.5 | 6404.5 |
| 19 | 2384.25 | 1313.25 | 1455.25 | 4790.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.521 | 0.488 | -0.318 | 0.049 |
| 02 | -0.05 | 0.065 | 0.461 | -0.927 |
| 03 | -1.34 | 0.761 | -1.697 | 0.347 |
| 04 | -3.324 | -2.268 | -3.521 | 1.343 |
| 05 | 1.335 | -1.987 | -4.726 | -2.921 |
| 06 | 1.351 | -2.16 | -5.417 | -4.057 |
| 07 | -4.821 | -2.531 | -4.485 | 1.361 |
| 08 | -3.535 | 0.431 | -0.52 | 0.608 |
| 09 | 0.148 | -1.847 | 0.914 | -1.674 |
| 10 | -0.852 | 0.315 | 0.402 | -0.345 |
| 11 | -0.899 | 0.042 | -1.693 | 0.861 |
| 12 | -0.45 | -0.015 | -0.98 | 0.694 |
| 13 | -0.076 | 0.137 | -0.881 | 0.414 |
| 14 | -0.2 | 0.397 | -1.102 | 0.308 |
| 15 | 0.059 | 0.256 | -1.544 | 0.361 |
| 16 | 0.62 | -0.504 | -0.79 | 0.08 |
| 17 | 0.784 | -1.421 | -1.737 | 0.331 |
| 18 | -0.18 | -1.198 | -1.244 | 0.946 |
| 19 | -0.042 | -0.637 | -0.535 | 0.656 |