Model info
| Transcription factor | TBP | ||||||||
| Model | TBP_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | vvKATAWAWdv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 102 | ||||||||
| TF family | TBP-related factors{8.1.1} | ||||||||
| TF subfamily | TBP{8.1.1.0.1} | ||||||||
| HGNC | 11588 | ||||||||
| EntrezGene | 6908 | ||||||||
| UniProt ID | TBP_HUMAN | ||||||||
| UniProt AC | P20226 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 33.381 | 15.877 | 41.896 | 9.846 |
| 02 | 31.104 | 21.761 | 46.006 | 2.129 |
| 03 | 8.752 | 8.752 | 17.267 | 66.23 |
| 04 | 76.4 | 4.731 | 0.591 | 19.278 |
| 05 | 11.354 | 1.537 | 8.752 | 79.357 |
| 06 | 94.495 | 0.591 | 5.913 | 0.0 |
| 07 | 65.402 | 0.0 | 2.365 | 33.233 |
| 08 | 87.163 | 0.591 | 8.752 | 4.494 |
| 09 | 40.684 | 2.72 | 9.816 | 47.78 |
| 10 | 32.169 | 10.407 | 25.427 | 32.996 |
| 11 | 20.224 | 41.748 | 28.739 | 10.289 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.268 | -0.438 | 0.489 | -0.876 |
| 02 | 0.2 | -0.142 | 0.58 | -2.085 |
| 03 | -0.98 | -0.98 | -0.36 | 0.937 |
| 04 | 1.077 | -1.501 | -2.717 | -0.256 |
| 05 | -0.747 | -2.284 | -0.98 | 1.115 |
| 06 | 1.287 | -2.717 | -1.318 | -3.13 |
| 07 | 0.925 | -3.13 | -2.015 | 0.264 |
| 08 | 1.207 | -2.717 | -0.98 | -1.542 |
| 09 | 0.46 | -1.919 | -0.878 | 0.617 |
| 10 | 0.233 | -0.826 | 0.007 | 0.257 |
| 11 | -0.211 | 0.485 | 0.124 | -0.836 |