Model info
| Transcription factor | SMARCC1 | ||||||||
| Model | SMRC1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | vnvTGAGTCAb | ||||||||
| wAUC | 0.7816124807239252 | ||||||||
| Best AUC | 0.7816124807239251 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Myb/SANT domain factors{3.5.1} | ||||||||
| TF subfamily | TADA2-like factors{3.5.1.6} | ||||||||
| HGNC | 11104 | ||||||||
| EntrezGene | 6599 | ||||||||
| UniProt ID | SMRC1_HUMAN | ||||||||
| UniProt AC | Q92922 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 70.643 | 157.227 | 209.594 | 62.536 |
| 02 | 91.537 | 119.165 | 185.924 | 103.375 |
| 03 | 119.727 | 218.192 | 147.062 | 15.019 |
| 04 | 46.434 | 5.937 | 6.799 | 440.831 |
| 05 | 0.966 | 16.663 | 469.833 | 12.538 |
| 06 | 450.578 | 8.791 | 27.491 | 13.14 |
| 07 | 3.033 | 1.052 | 480.873 | 15.041 |
| 08 | 3.805 | 35.672 | 41.321 | 419.202 |
| 09 | 17.838 | 472.437 | 7.794 | 1.931 |
| 10 | 454.684 | 24.571 | 2.836 | 17.909 |
| 11 | 8.964 | 223.115 | 152.043 | 115.878 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.561 | 0.227 | 0.512 | -0.68 |
| 02 | -0.307 | -0.047 | 0.393 | -0.187 |
| 03 | -0.043 | 0.552 | 0.161 | -2.033 |
| 04 | -0.97 | -2.827 | -2.718 | 1.252 |
| 05 | -3.917 | -1.938 | 1.315 | -2.195 |
| 06 | 1.273 | -2.504 | -1.472 | -2.153 |
| 07 | -3.317 | -3.883 | 1.338 | -2.032 |
| 08 | -3.162 | -1.224 | -1.082 | 1.201 |
| 09 | -1.876 | 1.321 | -2.606 | -3.592 |
| 10 | 1.282 | -1.578 | -3.361 | -1.872 |
| 11 | -2.488 | 0.574 | 0.194 | -0.075 |