Model info
| Transcription factor | Smad4 | ||||||||
| Model | SMAD4_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | WGTCTGbMh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 81 | ||||||||
| TF family | SMAD factors{7.1.1} | ||||||||
| TF subfamily | Co-activating Smads (Co-Smad){7.1.1.2} | ||||||||
| MGI | 894293 | ||||||||
| EntrezGene | 17128 | ||||||||
| UniProt ID | SMAD4_MOUSE | ||||||||
| UniProt AC | P97471 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.776 | 9.931 | 7.516 | 49.656 |
| 02 | 0.0 | 5.796 | 71.119 | 0.966 |
| 03 | 0.0 | 2.053 | 0.0 | 75.828 |
| 04 | 0.0 | 77.881 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 77.881 |
| 06 | 13.282 | 0.0 | 64.599 | 0.0 |
| 07 | 7.848 | 17.146 | 31.152 | 21.734 |
| 08 | 19.923 | 44.072 | 9.418 | 4.468 |
| 09 | 10.052 | 32.873 | 9.811 | 25.145 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.55 | -0.624 | -0.871 | 0.904 |
| 02 | -2.938 | -1.094 | 1.256 | -2.303 |
| 03 | -2.938 | -1.879 | -2.938 | 1.319 |
| 04 | -2.938 | 1.346 | -2.938 | -2.938 |
| 05 | -2.938 | -2.938 | -2.938 | 1.346 |
| 06 | -0.358 | -2.938 | 1.162 | -2.938 |
| 07 | -0.833 | -0.12 | 0.45 | 0.104 |
| 08 | 0.022 | 0.787 | -0.671 | -1.308 |
| 09 | -0.613 | 0.502 | -0.635 | 0.244 |