Model info
| Transcription factor | Smad2 | ||||||||
| Model | SMAD2_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | KKGKCYGKMTv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 18 | ||||||||
| TF family | SMAD factors{7.1.1} | ||||||||
| TF subfamily | Regulatory Smads (R-Smad){7.1.1.1} | ||||||||
| MGI | 108051 | ||||||||
| EntrezGene | 17126 | ||||||||
| UniProt ID | SMAD2_MOUSE | ||||||||
| UniProt AC | Q62432 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.225 | 1.208 | 10.491 | 4.26 |
| 02 | 0.0 | 2.035 | 3.052 | 13.098 |
| 03 | 0.0 | 4.069 | 14.116 | 0.0 |
| 04 | 0.0 | 1.78 | 5.214 | 11.191 |
| 05 | 0.0 | 18.185 | 0.0 | 0.0 |
| 06 | 3.815 | 7.249 | 0.0 | 7.121 |
| 07 | 0.0 | 0.0 | 18.185 | 0.0 |
| 08 | 0.0 | 1.017 | 8.139 | 9.029 |
| 09 | 3.052 | 13.353 | 1.78 | 0.0 |
| 10 | 1.017 | 1.017 | 1.017 | 15.133 |
| 11 | 4.197 | 4.069 | 7.884 | 2.035 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.58 | -1.003 | 0.755 | -0.056 |
| 02 | -1.984 | -0.647 | -0.333 | 0.964 |
| 03 | -1.984 | -0.095 | 1.035 | -1.984 |
| 04 | -1.984 | -0.744 | 0.119 | 0.816 |
| 05 | -1.984 | 1.277 | -1.984 | -1.984 |
| 06 | -0.149 | 0.414 | -1.984 | 0.398 |
| 07 | -1.984 | -1.984 | 1.277 | -1.984 |
| 08 | -1.984 | -1.107 | 0.52 | 0.615 |
| 09 | -0.333 | 0.982 | -0.744 | -1.984 |
| 10 | -1.107 | -1.107 | -1.107 | 1.101 |
| 11 | -0.069 | -0.095 | 0.491 | -0.647 |