Model info
| Transcription factor | RFX1 | ||||||||
| Model | RFX1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Consensus | GTTGCbWbGSRR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 24 | ||||||||
| TF family | RFX-related factors{3.3.3} | ||||||||
| TF subfamily | RFX1 (EF-C){3.3.3.0.1} | ||||||||
| HGNC | 9982 | ||||||||
| EntrezGene | 5989 | ||||||||
| UniProt ID | RFX1_HUMAN | ||||||||
| UniProt AC | P22670 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.719 | 0.719 | 22.563 | 0.0 |
| 02 | 1.725 | 0.0 | 0.0 | 22.275 |
| 03 | 0.0 | 0.0 | 1.868 | 22.132 |
| 04 | 2.874 | 1.006 | 19.401 | 0.719 |
| 05 | 0.719 | 23.281 | 0.0 | 0.0 |
| 06 | 0.0 | 9.988 | 4.024 | 9.988 |
| 07 | 14.766 | 2.048 | 3.341 | 3.844 |
| 08 | 1.617 | 4.635 | 12.395 | 5.353 |
| 09 | 3.126 | 0.898 | 19.796 | 0.18 |
| 10 | 0.0 | 7.689 | 11.928 | 4.383 |
| 11 | 13.545 | 2.695 | 6.503 | 1.257 |
| 12 | 15.916 | 2.551 | 4.994 | 0.539 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.502 | -1.502 | 1.235 | -2.146 |
| 02 | -0.992 | -2.146 | -2.146 | 1.222 |
| 03 | -2.146 | -2.146 | -0.937 | 1.216 |
| 04 | -0.616 | -1.328 | 1.089 | -1.502 |
| 05 | -1.502 | 1.265 | -2.146 | -2.146 |
| 06 | -2.146 | 0.462 | -0.344 | 0.462 |
| 07 | 0.829 | -0.871 | -0.496 | -0.382 |
| 08 | -1.036 | -0.224 | 0.663 | -0.1 |
| 09 | -0.55 | -1.39 | 1.109 | -1.942 |
| 10 | -2.146 | 0.222 | 0.627 | -0.272 |
| 11 | 0.747 | -0.666 | 0.071 | -1.197 |
| 12 | 0.9 | -0.709 | -0.16 | -1.628 |