PRDM1_HUMAN.H10DI.C motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

PRDM1

Model

PRDM1_HUMAN.H10DI.C

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

17

Quality

C

Consensus

ddRMAGKGAAAGTdhnn

wAUC

0.9519447055487221

Best AUC

0.9519447055487221

Benchmark datasets

1

Aligned words

501

TF family

More than 3 adjacent zinc finger factors{2.3.3}

TF subfamily

PRDM1-like factors{2.3.3.12}

HGNC

9346

EntrezGene

639

UniProt ID

PRDM1_HUMAN

UniProt AC

O75626

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.8281
0.0005	7.2251
0.0001	12.2611

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	57.76	11.61	90.91	17.213	39.708	9.532	7.955	12.338	44.911	7.216	32.45	8.599	40.591	9.295	93.494	16.419
02	117.166	12.231	28.624	24.949	10.721	14.137	2.067	10.728	175.855	12.508	24.334	12.111	11.956	10.118	17.125	15.371
03	265.567	10.966	28.036	11.13	24.727	10.181	1.935	12.15	45.305	15.365	6.83	4.65	23.104	21.786	12.473	5.795
04	319.883	0.0	32.507	6.313	57.513	0.0	0.784	0.0	38.472	0.788	5.505	4.511	26.434	0.0	4.587	2.704
05	26.865	4.194	400.309	10.932	0.0	0.0	0.788	0.0	0.94	0.0	42.443	0.0	1.378	0.0	7.79	4.359
06	8.732	0.0	6.931	13.521	0.839	1.053	0.0	2.301	67.189	9.317	74.59	300.235	6.669	0.771	3.073	4.778
07	0.902	1.174	81.353	0.0	0.902	0.0	10.24	0.0	2.504	0.0	82.09	0.0	13.141	0.895	306.8	0.0
08	16.73	0.0	0.0	0.718	2.069	0.0	0.0	0.0	478.941	0.0	0.0	1.542	0.0	0.0	0.0	0.0
09	476.62	0.0	18.265	2.855	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	2.26	0.0	0.0	0.0
10	469.162	0.0	4.34	5.378	0.0	0.0	0.0	0.0	18.265	0.0	0.0	0.0	1.955	0.0	0.899	0.0
11	13.785	7.175	461.666	6.756	0.0	0.0	0.0	0.0	0.0	0.0	4.406	0.833	0.0	0.0	4.129	1.249
12	1.784	2.53	3.53	5.941	0.0	3.332	1.068	2.776	5.744	31.35	18.989	414.117	0.0	0.739	2.52	5.579
13	0.701	0.0	3.099	3.728	18.959	3.014	5.762	10.216	11.231	1.753	9.123	4.0	85.968	30.776	222.527	89.141
14	44.818	25.519	26.12	20.402	20.15	9.817	0.0	5.577	132.069	46.126	38.501	23.817	24.712	15.069	23.636	43.669
15	87.523	23.761	53.504	56.96	30.651	14.727	6.564	44.589	20.515	19.193	22.54	26.008	21.152	15.481	24.633	32.198
16	55.1	15.705	51.455	37.581	21.915	18.359	3.449	29.44	40.649	18.109	24.118	24.365	13.354	33.222	44.837	68.342

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.609	-0.97	1.06	-0.586	0.237	-1.16	-1.333	-0.911	0.359	-1.426	0.037	-1.259	0.259	-1.184	1.088	-0.633
02	1.313	-0.919	-0.087	-0.222	-1.047	-0.778	-2.556	-1.046	1.717	-0.897	-0.247	-0.929	-0.941	-1.102	-0.591	-0.697
03	2.129	-1.025	-0.107	-1.01	-0.231	-1.096	-2.611	-0.926	0.368	-0.697	-1.478	-1.837	-0.298	-0.355	-0.9	-1.632
04	2.315	-4.4	0.039	-1.552	0.604	-4.4	-3.295	-4.4	0.206	-3.292	-1.681	-1.865	-0.165	-4.4	-1.85	-2.325
05	-0.149	-1.932	2.539	-1.028	-4.4	-4.4	-3.292	-4.4	-3.17	-4.4	0.303	-4.4	-2.885	-4.4	-1.353	-1.897
06	-1.244	-4.4	-1.464	-0.822	-3.249	-3.088	-4.4	-2.465	0.759	-1.182	0.863	2.251	-1.5	-3.306	-2.213	-1.812
07	-3.2	-3.008	0.949	-4.4	-3.2	-4.4	-1.091	-4.4	-2.392	-4.4	0.958	-4.4	-0.849	-3.205	2.273	-4.4
08	-0.614	-4.4	-4.4	-3.353	-2.555	-4.4	-4.4	-4.4	2.718	-4.4	-4.4	-2.797	-4.4	-4.4	-4.4	-4.4
09	2.713	-4.4	-0.528	-2.278	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-2.48	-4.4	-4.4	-4.4
10	2.697	-4.4	-1.901	-1.702	-4.4	-4.4	-4.4	-4.4	-0.528	-4.4	-4.4	-4.4	-2.603	-4.4	-3.201	-4.4
11	-0.803	-1.431	2.681	-1.488	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-1.887	-3.254	-4.4	-4.4	-1.946	-2.961
12	-2.679	-2.383	-2.089	-1.609	-4.4	-2.14	-3.079	-2.302	-1.641	0.003	-0.49	2.573	-4.4	-3.334	-2.387	-1.668
13	-3.369	-4.4	-2.205	-2.039	-0.492	-2.23	-1.638	-1.093	-1.002	-2.693	-1.202	-1.975	1.004	-0.015	1.952	1.04
14	0.357	-0.2	-0.177	-0.42	-0.432	-1.131	-4.4	-1.668	1.432	0.385	0.206	-0.268	-0.232	-0.716	-0.275	0.331
15	1.022	-0.27	0.533	0.595	-0.019	-0.739	-1.515	0.352	-0.414	-0.48	-0.322	-0.181	-0.384	-0.69	-0.235	0.03
16	0.562	-0.676	0.494	0.182	-0.35	-0.523	-2.11	-0.059	0.26	-0.537	-0.255	-0.245	-0.834	0.06	0.357	0.776