Model info
Transcription factorPparg
ModelPPARG_MOUSE.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length9
Quality
S
ConsensushRdAGGKCA
wAUC
0.6440152618939315
Best AUC
0.6655587349852932
Benchmark datasets6
Aligned words1004
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
MGI97747
EntrezGene19016
UniProt IDPPARG_MOUSE
UniProt ACP37238
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.8671
0.0005 5.7836
0.0001 7.471
PCM
ACGT
01348.0412.036100.328138.003
02595.94114.789263.90123.736
03439.9139.792139.277379.388
04851.0370.546144.5972.186
0528.9970.0963.8815.489
069.7131.639938.049.014
0724.22652.521161.725759.894
0820.775814.29131.62731.675
09933.10415.36717.88332.012
PWM
ACGT
010.330.499-0.901-0.587
020.866-0.7690.055-2.289
030.564-1.801-0.5780.416
041.222-4.706-0.541-4.163
05-2.102-4.9811.346-3.55
06-3.09-4.3131.319-1.6
07-2.27-1.533-0.431.109
08-2.4131.178-0.634-2.018
091.314-2.688-2.551-2.008