Model info
| Transcription factor | Plag1 | ||||||||
| Model | PLAG1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | RGGGGSMhndRdMGGGK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 25 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | PLAG factors{2.3.3.25} | ||||||||
| MGI | 1891916 | ||||||||
| EntrezGene | 56711 | ||||||||
| UniProt ID | PLAG1_MOUSE | ||||||||
| UniProt AC | Q9QYE0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.5 | 0.5 | 16.5 | 2.5 |
| 02 | 5.0 | 0.0 | 20.0 | 0.0 |
| 03 | 10.0 | 0.0 | 15.0 | 0.0 |
| 04 | 0.0 | 0.0 | 25.0 | 0.0 |
| 05 | 0.0 | 8.0 | 17.0 | 0.0 |
| 06 | 1.0 | 14.0 | 7.0 | 3.0 |
| 07 | 13.0 | 9.0 | 2.0 | 1.0 |
| 08 | 5.0 | 8.0 | 3.0 | 9.0 |
| 09 | 5.0 | 8.0 | 6.0 | 6.0 |
| 10 | 11.0 | 2.0 | 5.0 | 7.0 |
| 11 | 8.0 | 6.0 | 11.0 | 0.0 |
| 12 | 4.0 | 2.0 | 12.0 | 7.0 |
| 13 | 17.0 | 4.0 | 3.0 | 1.0 |
| 14 | 2.0 | 0.0 | 20.0 | 3.0 |
| 15 | 1.0 | 0.0 | 24.0 | 0.0 |
| 16 | 0.0 | 0.0 | 25.0 | 0.0 |
| 17 | 2.0 | 1.0 | 17.0 | 5.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.112 | -1.688 | 0.897 | -0.758 |
| 02 | -0.195 | -2.171 | 1.081 | -2.171 |
| 03 | 0.426 | -2.171 | 0.807 | -2.171 |
| 04 | -2.171 | -2.171 | 1.297 | -2.171 |
| 05 | -2.171 | 0.222 | 0.926 | -2.171 |
| 06 | -1.363 | 0.741 | 0.101 | -0.617 |
| 07 | 0.671 | 0.329 | -0.922 | -1.363 |
| 08 | -0.195 | 0.222 | -0.617 | 0.329 |
| 09 | -0.195 | 0.222 | -0.036 | -0.036 |
| 10 | 0.515 | -0.922 | -0.195 | 0.101 |
| 11 | 0.222 | -0.036 | 0.515 | -2.171 |
| 12 | -0.384 | -0.922 | 0.596 | 0.101 |
| 13 | 0.926 | -0.384 | -0.617 | -1.363 |
| 14 | -0.922 | -2.171 | 1.081 | -0.617 |
| 15 | -1.363 | -2.171 | 1.257 | -2.171 |
| 16 | -2.171 | -2.171 | 1.297 | -2.171 |
| 17 | -0.922 | -1.363 | 0.926 | -0.195 |