Model info
| Transcription factor | PKNOX1 | ||||||||
| Model | PKNX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | RdvKTGATWGAYK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 10 | ||||||||
| TF family | TALE-type homeo domain factors{3.1.4} | ||||||||
| TF subfamily | PKNOX{3.1.4.5} | ||||||||
| HGNC | 9022 | ||||||||
| EntrezGene | 5316 | ||||||||
| UniProt ID | PKNX1_HUMAN | ||||||||
| UniProt AC | P55347 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.735 | 2.082 | 3.184 | 0.0 |
| 02 | 3.184 | 0.98 | 3.735 | 1.102 |
| 03 | 2.755 | 3.061 | 2.204 | 0.98 |
| 04 | 0.0 | 2.082 | 2.204 | 4.714 |
| 05 | 0.0 | 0.0 | 0.0 | 9.0 |
| 06 | 0.0 | 0.0 | 9.0 | 0.0 |
| 07 | 9.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 4.286 | 0.0 | 4.714 |
| 09 | 2.204 | 0.551 | 1.102 | 5.143 |
| 10 | 0.0 | 0.0 | 8.02 | 0.98 |
| 11 | 7.347 | 1.653 | 0.0 | 0.0 |
| 12 | 1.102 | 1.653 | 0.98 | 5.265 |
| 13 | 2.082 | 0.0 | 4.408 | 2.51 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.426 | -0.062 | 0.288 | -1.628 |
| 02 | 0.288 | -0.605 | 0.426 | -0.528 |
| 03 | 0.166 | 0.254 | -0.017 | -0.605 |
| 04 | -1.628 | -0.062 | -0.017 | 0.631 |
| 05 | -1.628 | -1.628 | -1.628 | 1.227 |
| 06 | -1.628 | -1.628 | 1.227 | -1.628 |
| 07 | 1.227 | -1.628 | -1.628 | -1.628 |
| 08 | -1.628 | 0.547 | -1.628 | 0.631 |
| 09 | -0.017 | -0.934 | -0.528 | 0.71 |
| 10 | -1.628 | -1.628 | 1.119 | -0.605 |
| 11 | 1.037 | -0.24 | -1.628 | -1.628 |
| 12 | -0.528 | -0.24 | -0.605 | 0.731 |
| 13 | -0.062 | -1.628 | 0.572 | 0.089 |