Model info
| Transcription factor | TP53 | ||||||||
| Model | P53_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 20 | ||||||||
| Quality | B | ||||||||
| Consensus | dRRCWTGYYWGRRCWWGYYh | ||||||||
| wAUC | 0.8303298500881042 | ||||||||
| Best AUC | 0.9447500814138173 | ||||||||
| Benchmark datasets | 3 | ||||||||
| Aligned words | 504 | ||||||||
| TF family | p53-related factors{6.3.1} | ||||||||
| TF subfamily | p53{6.3.1.0.1} | ||||||||
| HGNC | 11998 | ||||||||
| EntrezGene | 7157 | ||||||||
| UniProt ID | P53_HUMAN | ||||||||
| UniProt AC | P04637 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 178.732 | 41.933 | 228.364 | 50.971 |
| 02 | 108.545 | 16.051 | 309.857 | 65.546 |
| 03 | 206.418 | 25.913 | 244.093 | 23.576 |
| 04 | 12.495 | 453.899 | 9.094 | 24.512 |
| 05 | 388.646 | 7.318 | 27.13 | 76.907 |
| 06 | 60.466 | 12.764 | 22.434 | 404.336 |
| 07 | 4.396 | 6.867 | 476.693 | 12.044 |
| 08 | 15.014 | 155.28 | 10.106 | 319.6 |
| 09 | 26.792 | 312.558 | 31.238 | 129.412 |
| 10 | 87.77 | 16.886 | 65.11 | 330.234 |
| 11 | 46.891 | 45.626 | 398.749 | 8.734 |
| 12 | 94.828 | 28.52 | 298.169 | 78.484 |
| 13 | 229.173 | 6.577 | 237.885 | 26.365 |
| 14 | 3.109 | 491.001 | 0.0 | 5.89 |
| 15 | 385.747 | 14.197 | 17.962 | 82.094 |
| 16 | 84.721 | 15.253 | 31.986 | 368.041 |
| 17 | 17.527 | 7.657 | 465.748 | 9.067 |
| 18 | 28.752 | 208.858 | 6.993 | 255.397 |
| 19 | 56.5 | 293.393 | 29.649 | 120.458 |
| 20 | 112.38 | 178.166 | 34.902 | 174.553 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.354 | -1.068 | 0.597 | -0.879 |
| 02 | -0.139 | -1.972 | 0.9 | -0.634 |
| 03 | 0.497 | -1.528 | 0.663 | -1.617 |
| 04 | -2.198 | 1.281 | -2.475 | -1.58 |
| 05 | 1.126 | -2.658 | -1.484 | -0.478 |
| 06 | -0.713 | -2.179 | -1.663 | 1.165 |
| 07 | -3.057 | -2.71 | 1.329 | -2.231 |
| 08 | -2.033 | 0.215 | -2.385 | 0.931 |
| 09 | -1.496 | 0.909 | -1.351 | 0.034 |
| 10 | -0.348 | -1.926 | -0.641 | 0.964 |
| 11 | -0.96 | -0.987 | 1.152 | -2.51 |
| 12 | -0.272 | -1.437 | 0.862 | -0.458 |
| 13 | 0.601 | -2.745 | 0.638 | -1.511 |
| 14 | -3.301 | 1.359 | -4.4 | -2.833 |
| 15 | 1.119 | -2.084 | -1.869 | -0.414 |
| 16 | -0.383 | -2.019 | -1.328 | 1.072 |
| 17 | -1.892 | -2.62 | 1.306 | -2.478 |
| 18 | -1.429 | 0.508 | -2.695 | 0.708 |
| 19 | -0.779 | 0.846 | -1.4 | -0.037 |
| 20 | -0.105 | 0.351 | -1.245 | 0.33 |