OTX2_HUMAN.H10MO.C motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

OTX2

Model

OTX2_HUMAN.H10MO.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Origin

HOCOMOCO v9

Model length

15

Quality

C

Consensus

dhdMhvSGATTARvd

wAUC

Best AUC

Benchmark datasets

Aligned words

25

TF family

Paired-related HD factors{3.1.3}

TF subfamily

OTX{3.1.3.17}

HGNC

8522

EntrezGene

5015

UniProt ID

OTX2_HUMAN

UniProt AC

P32243

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.8831
0.0005	5.6401
0.0001	7.1941

PCM

	A	C	G	T
01	3.602	2.535	10.965	7.764
02	7.684	5.016	2.988	9.178
03	5.87	2.028	7.897	9.071
04	13.874	7.043	3.949	0.0
05	10.779	3.949	2.988	7.15
06	6.937	5.976	9.925	2.028
07	1.921	3.949	17.929	1.067
08	2.988	0.0	21.877	0.0
09	23.798	1.067	0.0	0.0
10	0.0	0.0	0.0	24.866
11	0.96	0.0	0.0	23.905
12	24.866	0.0	0.0	0.0
13	12.166	2.134	8.644	1.921
14	11.739	3.949	5.976	3.202
15	4.162	3.949	8.538	8.217

PWM

	A	C	G	T
01	-0.466	-0.743	0.517	0.199
02	0.19	-0.188	-0.616	0.352
03	-0.051	-0.908	0.215	0.341
04	0.738	0.111	-0.39	-2.168
05	0.501	-0.39	-0.616	0.125
06	0.098	-0.035	0.424	-0.908
07	-0.947	-0.39	0.982	-1.322
08	-0.616	-2.168	1.173	-2.168
09	1.254	-1.322	-2.168	-2.168
10	-2.168	-2.168	-2.168	1.297
11	-1.381	-2.168	-2.168	1.258
12	1.297	-2.168	-2.168	-2.168
13	0.614	-0.871	0.297	-0.947
14	0.58	-0.39	-0.035	-0.561
15	-0.346	-0.39	0.286	0.251