Model info
Transcription factorNr1h2
ModelNR1H2_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length19
Quality
D
ConsensusTMRAGGTCAAAGGTCAASK
wAUC
Best AUC
Benchmark datasets
Aligned words24
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
MGI1352463
EntrezGene22260
UniProt IDNR1H2_MOUSE
UniProt ACQ60644
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.8371
0.0005 2.1142
0.0001 4.8171
PCM
ACGT
010.7810.7810.78116.408
0213.2833.9070.01.563
0313.2830.03.9071.563
0414.8450.03.9070.0
050.00.018.7520.0
060.00.017.9710.781
070.00.00.018.752
080.018.7520.00.0
0918.7520.00.00.0
1018.7520.00.00.0
1118.7520.00.00.0
120.00.018.7520.0
130.00.018.7520.0
140.00.00.018.752
150.018.7520.00.0
1618.7520.00.00.0
1715.6270.01.5631.563
180.011.724.6882.344
190.00.78111.726.251
PWM
ACGT
01-1.275-1.275-1.2751.151
020.95-0.156-2.001-0.859
030.95-2.001-0.156-0.859
041.056-2.001-0.156-2.001
05-2.001-2.0011.279-2.001
06-2.001-2.0011.238-1.275
07-2.001-2.001-2.0011.279
08-2.0011.279-2.001-2.001
091.279-2.001-2.001-2.001
101.279-2.001-2.001-2.001
111.279-2.001-2.001-2.001
12-2.001-2.0011.279-2.001
13-2.001-2.0011.279-2.001
14-2.001-2.001-2.0011.279
15-2.0011.279-2.001-2.001
161.279-2.001-2.001-2.001
171.105-2.001-0.859-0.859
18-2.0010.8320.0-0.566
19-2.001-1.2750.8320.253