Transcription factor | NKX6-2 | ||||||||
Model | NKX62_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | ndWTAATKRbn | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 8076 | ||||||||
TF family | NK-related factors{3.1.2} | ||||||||
TF subfamily | NK-6{3.1.2.19} | ||||||||
HGNC | 19321 | ||||||||
EntrezGene | 84504 | ||||||||
UniProt ID | NKX62_HUMAN | ||||||||
UniProt AC | Q9C056 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2466.833 | 1765.473 | 1600.905 | 2227.939 |
02 | 2800.091 | 1227.881 | 1428.821 | 2604.357 |
03 | 1508.376 | 364.126 | 447.998 | 5740.649 |
04 | 149.113 | 188.475 | 100.442 | 7623.12 |
05 | 7665.249 | 3.857 | 239.172 | 152.872 |
06 | 8059.257 | 0.86 | 0.172 | 0.86 |
07 | 77.521 | 0.172 | 13.317 | 7970.139 |
08 | 889.815 | 239.964 | 2981.702 | 3949.668 |
09 | 5055.679 | 248.152 | 2469.624 | 287.693 |
10 | 730.718 | 3715.366 | 2375.183 | 1239.883 |
11 | 1563.51 | 2729.969 | 2069.632 | 1698.037 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.202 | -0.132 | -0.23 | 0.1 |
02 | 0.329 | -0.495 | -0.343 | 0.256 |
03 | -0.289 | -1.706 | -1.5 | 1.046 |
04 | -2.59 | -2.359 | -2.978 | 1.33 |
05 | 1.335 | -5.8 | -2.123 | -2.565 |
06 | 1.385 | -6.475 | -6.726 | -6.475 |
07 | -3.23 | -6.726 | -4.865 | 1.374 |
08 | -0.816 | -2.12 | 0.391 | 0.672 |
09 | 0.919 | -2.087 | 0.203 | -1.94 |
10 | -1.013 | 0.611 | 0.164 | -0.485 |
11 | -0.254 | 0.303 | 0.027 | -0.171 |