Model info
| Transcription factor | NFIC | ||||||||
| Model | NFIC_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Consensus | hYYTGGCWbnndbYCMd | ||||||||
| wAUC | 0.8185734631144661 | ||||||||
| Best AUC | 0.8360354722373089 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Nuclear factor 1{7.1.2} | ||||||||
| TF subfamily | NF-1C (NF-IC){7.1.2.0.3} | ||||||||
| HGNC | 7786 | ||||||||
| EntrezGene | 4782 | ||||||||
| UniProt ID | NFIC_HUMAN | ||||||||
| UniProt AC | P08651 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 106.211 | 110.074 | 76.745 | 206.97 |
| 02 | 20.615 | 280.598 | 52.249 | 146.538 |
| 03 | 9.348 | 192.816 | 7.322 | 290.514 |
| 04 | 12.035 | 6.458 | 13.87 | 467.637 |
| 05 | 2.7 | 2.07 | 492.283 | 2.947 |
| 06 | 1.879 | 6.344 | 488.192 | 3.585 |
| 07 | 41.249 | 442.739 | 12.367 | 3.645 |
| 08 | 261.321 | 48.304 | 19.226 | 171.15 |
| 09 | 76.973 | 138.702 | 204.334 | 79.991 |
| 10 | 144.871 | 146.097 | 99.071 | 109.961 |
| 11 | 112.873 | 144.356 | 165.899 | 76.872 |
| 12 | 167.241 | 50.16 | 110.121 | 172.478 |
| 13 | 25.319 | 78.214 | 240.994 | 155.473 |
| 14 | 43.065 | 378.602 | 9.775 | 68.558 |
| 15 | 20.864 | 442.733 | 12.955 | 23.448 |
| 16 | 256.252 | 175.655 | 17.207 | 50.886 |
| 17 | 222.69 | 65.906 | 142.25 | 69.154 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.161 | -0.125 | -0.48 | 0.499 |
| 02 | -1.742 | 0.802 | -0.855 | 0.157 |
| 03 | -2.452 | 0.429 | -2.657 | 0.836 |
| 04 | -2.231 | -2.76 | -2.105 | 1.31 |
| 05 | -3.393 | -3.553 | 1.362 | -3.336 |
| 06 | -3.607 | -2.774 | 1.353 | -3.204 |
| 07 | -1.084 | 1.256 | -2.207 | -3.192 |
| 08 | 0.731 | -0.932 | -1.807 | 0.311 |
| 09 | -0.477 | 0.103 | 0.487 | -0.44 |
| 10 | 0.146 | 0.154 | -0.229 | -0.127 |
| 11 | -0.101 | 0.142 | 0.28 | -0.479 |
| 12 | 0.288 | -0.895 | -0.125 | 0.319 |
| 13 | -1.55 | -0.462 | 0.651 | 0.216 |
| 14 | -1.043 | 1.1 | -2.413 | -0.591 |
| 15 | -1.731 | 1.256 | -2.166 | -1.622 |
| 16 | 0.712 | 0.337 | -1.909 | -0.881 |
| 17 | 0.572 | -0.629 | 0.128 | -0.582 |