Model info
| Transcription factor | Neurod1 | ||||||||
| Model | NDF1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | nRRCAGMTGGb | ||||||||
| wAUC | 0.8718431704713612 | ||||||||
| Best AUC | 0.8718431704713613 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 478 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors{1.2.3.4} | ||||||||
| MGI | 1339708 | ||||||||
| EntrezGene | 18012 | ||||||||
| UniProt ID | NDF1_MOUSE | ||||||||
| UniProt AC | Q60867 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 104.525 | 79.244 | 121.885 | 171.518 |
| 02 | 178.547 | 11.534 | 256.505 | 30.587 |
| 03 | 239.617 | 69.516 | 165.029 | 3.01 |
| 04 | 60.896 | 403.81 | 6.618 | 5.848 |
| 05 | 473.345 | 0.9 | 0.0 | 2.927 |
| 06 | 3.691 | 4.492 | 396.182 | 72.807 |
| 07 | 339.101 | 116.907 | 15.248 | 5.917 |
| 08 | 7.817 | 0.0 | 7.191 | 462.164 |
| 09 | 10.887 | 1.871 | 464.414 | 0.0 |
| 10 | 5.547 | 4.578 | 403.928 | 63.119 |
| 11 | 44.568 | 216.61 | 59.401 | 156.593 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.13 | -0.403 | 0.021 | 0.359 |
| 02 | 0.399 | -2.224 | 0.759 | -1.325 |
| 03 | 0.691 | -0.531 | 0.321 | -3.279 |
| 04 | -0.66 | 1.21 | -2.695 | -2.794 |
| 05 | 1.369 | -3.902 | -4.361 | -3.297 |
| 06 | -3.139 | -2.997 | 1.191 | -0.486 |
| 07 | 1.036 | -0.02 | -1.974 | -2.785 |
| 08 | -2.558 | -4.361 | -2.627 | 1.345 |
| 09 | -2.274 | -3.567 | 1.35 | -4.361 |
| 10 | -2.836 | -2.983 | 1.211 | -0.625 |
| 11 | -0.963 | 0.591 | -0.684 | 0.269 |