Model info
Transcription factorNANOG
ModelNANOG_HUMAN.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length8
Quality
S
ConsensusTTTAATGb
wAUC
0.5720023024582791
Best AUC
0.6136287686454311
Benchmark datasets6
Aligned words5
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
HGNC20857
EntrezGene79923
UniProt IDNANOG_HUMAN
UniProt ACQ9H9S0
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.8665
0.0005 5.7651
0.0001 7.085
PCM
ACGT
010.00.01.9573.043
020.00.00.05.0
030.00.01.0873.913
045.00.00.00.0
055.00.00.00.0
060.00.00.05.0
070.00.05.00.0
080.00.9783.0430.978
PWM
ACGT
01-1.413-1.4130.3560.735
02-1.413-1.413-1.4131.185
03-1.413-1.413-0.1040.96
041.185-1.413-1.413-1.413
051.185-1.413-1.413-1.413
06-1.413-1.413-1.4131.185
07-1.413-1.4131.185-1.413
08-1.413-0.180.735-0.18