Model info
| Transcription factor | NANOG | ||||||||
| Model | NANOG_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Consensus | bYWTTSWnWTGYWRWdd | ||||||||
| wAUC | 0.8326366684082871 | ||||||||
| Best AUC | 0.9067988530159274 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NANOG{3.1.2.12} | ||||||||
| HGNC | 20857 | ||||||||
| EntrezGene | 79923 | ||||||||
| UniProt ID | NANOG_HUMAN | ||||||||
| UniProt AC | Q9H9S0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 35.415 | 213.223 | 104.156 | 147.207 |
| 02 | 37.715 | 274.867 | 29.635 | 157.783 |
| 03 | 162.891 | 30.805 | 27.79 | 278.514 |
| 04 | 7.94 | 29.902 | 13.409 | 448.75 |
| 05 | 21.735 | 3.9 | 15.413 | 458.952 |
| 06 | 43.847 | 142.028 | 290.015 | 24.11 |
| 07 | 199.221 | 9.949 | 15.873 | 274.958 |
| 08 | 118.502 | 102.159 | 100.165 | 179.173 |
| 09 | 380.998 | 28.012 | 27.646 | 63.343 |
| 10 | 62.1 | 6.789 | 18.825 | 412.285 |
| 11 | 10.742 | 11.115 | 393.702 | 84.442 |
| 12 | 12.592 | 312.811 | 40.014 | 134.583 |
| 13 | 325.586 | 8.028 | 8.028 | 158.358 |
| 14 | 333.173 | 21.005 | 116.825 | 28.997 |
| 15 | 393.105 | 22.23 | 26.865 | 57.8 |
| 16 | 59.862 | 56.985 | 85.662 | 297.491 |
| 17 | 73.493 | 70.815 | 176.024 | 179.668 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.231 | 0.529 | -0.18 | 0.162 |
| 02 | -1.17 | 0.781 | -1.401 | 0.23 |
| 03 | 0.262 | -1.364 | -1.462 | 0.794 |
| 04 | -2.59 | -1.392 | -2.135 | 1.269 |
| 05 | -1.693 | -3.144 | -2.009 | 1.292 |
| 06 | -1.025 | 0.126 | 0.835 | -1.596 |
| 07 | 0.462 | -2.398 | -1.983 | 0.782 |
| 08 | -0.053 | -0.199 | -0.218 | 0.356 |
| 09 | 1.106 | -1.454 | -1.466 | -0.668 |
| 10 | -0.687 | -2.719 | -1.826 | 1.185 |
| 11 | -2.331 | -2.302 | 1.139 | -0.386 |
| 12 | -2.191 | 0.91 | -1.113 | 0.073 |
| 13 | 0.95 | -2.581 | -2.581 | 0.234 |
| 14 | 0.973 | -1.725 | -0.067 | -1.421 |
| 15 | 1.137 | -1.672 | -1.494 | -0.757 |
| 16 | -0.723 | -0.771 | -0.372 | 0.86 |
| 17 | -0.523 | -0.559 | 0.339 | 0.359 |