Model info
| Transcription factor | Msx3 | ||||||||
| Model | MSX3_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | TAATTGbWWdWTAATTd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2675 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| MGI | 106587 | ||||||||
| EntrezGene | 17703 | ||||||||
| UniProt ID | MSX3_MOUSE | ||||||||
| UniProt AC | P70354 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 127.75 | 125.75 | 121.75 | 2299.75 |
| 02 | 2642.0 | 6.0 | 18.0 | 9.0 |
| 03 | 2672.0 | 1.0 | 1.0 | 1.0 |
| 04 | 1.75 | 0.75 | 8.75 | 2663.75 |
| 05 | 1.0 | 63.0 | 15.0 | 2596.0 |
| 06 | 323.0 | 8.0 | 2281.0 | 63.0 |
| 07 | 206.0 | 790.0 | 1344.0 | 335.0 |
| 08 | 821.0 | 191.0 | 134.0 | 1529.0 |
| 09 | 849.0 | 226.0 | 148.0 | 1452.0 |
| 10 | 355.0 | 326.0 | 382.0 | 1612.0 |
| 11 | 353.0 | 260.0 | 171.0 | 1891.0 |
| 12 | 12.0 | 5.0 | 0.0 | 2658.0 |
| 13 | 2596.0 | 0.0 | 49.0 | 30.0 |
| 14 | 2663.25 | 0.25 | 1.25 | 10.25 |
| 15 | 3.25 | 5.25 | 5.25 | 2661.25 |
| 16 | 10.5 | 8.5 | 101.5 | 2554.5 |
| 17 | 644.0 | 325.0 | 1357.0 | 349.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.643 | -1.658 | -1.69 | 1.233 |
| 02 | 1.372 | -4.432 | -3.514 | -4.113 |
| 03 | 1.383 | -5.419 | -5.419 | -5.419 |
| 04 | -5.194 | -5.507 | -4.136 | 1.38 |
| 05 | -5.419 | -2.334 | -3.677 | 1.354 |
| 06 | -0.725 | -4.208 | 1.225 | -2.334 |
| 07 | -1.171 | 0.166 | 0.697 | -0.688 |
| 08 | 0.205 | -1.246 | -1.596 | 0.825 |
| 09 | 0.238 | -1.079 | -1.498 | 0.774 |
| 10 | -0.631 | -0.715 | -0.558 | 0.878 |
| 11 | -0.636 | -0.94 | -1.355 | 1.038 |
| 12 | -3.871 | -4.566 | -5.829 | 1.378 |
| 13 | 1.354 | -5.829 | -2.577 | -3.043 |
| 14 | 1.38 | -5.71 | -5.338 | -4.005 |
| 15 | -4.855 | -4.531 | -4.531 | 1.379 |
| 16 | -3.985 | -4.16 | -1.869 | 1.338 |
| 17 | -0.038 | -0.718 | 0.706 | -0.648 |