HMGA2_MOUSE.H10MO.D motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

Hmga2

Model

HMGA2_MOUSE.H10MO.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Origin

HOCOMOCO v9

Model length

15

Quality

D

Consensus

AATAWhSSSSAATAT

wAUC

Best AUC

Benchmark datasets

Aligned words

75

TF family

HMGA factors{8.2.1}

TF subfamily

HMGA2 (HMGI-C){8.2.1.0.2}

MGI

101761

EntrezGene

15364

UniProt ID

HMGA2_MOUSE

UniProt AC

P52927

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.3221
0.0005	4.4371
0.0001	6.7021

PCM

	A	C	G	T
01	71.752	1.241	1.241	1.241
02	54.621	0.0	0.0	20.855
03	11.917	0.0	0.0	63.559
04	44.69	0.0	0.0	30.786
05	39.724	1.986	0.993	32.772
06	12.91	20.855	8.938	32.772
07	0.0	41.71	29.793	3.972
08	1.986	24.828	46.676	1.986
09	0.0	37.738	32.772	4.966
10	1.986	31.779	40.717	0.993
11	71.503	0.0	2.979	0.993
12	59.586	0.993	0.0	14.897
13	1.986	0.993	0.0	72.497
14	59.586	0.0	0.993	14.897
15	1.49	1.49	1.49	71.007

PWM

	A	C	G	T
01	1.295	-2.151	-2.151	-2.151
02	1.027	-2.915	-2.915	0.095
03	-0.428	-2.915	-2.915	1.176
04	0.83	-2.915	-2.915	0.468
05	0.716	-1.872	-2.264	0.529
06	-0.355	0.095	-0.689	0.529
07	-2.915	0.763	0.437	-1.373
08	-1.872	0.261	0.873	-1.872
09	-2.915	0.666	0.529	-1.194
10	-1.872	0.499	0.74	-2.264
11	1.292	-2.915	-1.592	-2.264
12	1.112	-2.264	-2.915	-0.222
13	-1.872	-2.264	-2.915	1.305
14	1.112	-2.915	-2.264	-0.222
15	-2.049	-2.049	-2.049	1.285