Model info
| Transcription factor | Gli1 | ||||||||
| Model | GLI1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | bTGGGdGGTCb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 31 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | GLI-like factors{2.3.3.1} | ||||||||
| MGI | 95727 | ||||||||
| EntrezGene | 14632 | ||||||||
| UniProt ID | GLI1_MOUSE | ||||||||
| UniProt AC | P47806 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.204 | 12.829 | 9.688 | 7.279 |
| 02 | 0.0 | 0.0 | 0.0 | 31.0 |
| 03 | 0.0 | 0.0 | 26.916 | 4.084 |
| 04 | 0.0 | 0.0 | 29.01 | 1.99 |
| 05 | 0.838 | 0.0 | 30.162 | 0.0 |
| 06 | 2.828 | 1.257 | 2.828 | 24.088 |
| 07 | 0.0 | 0.0 | 30.057 | 0.943 |
| 08 | 0.838 | 0.0 | 27.02 | 3.142 |
| 09 | 0.943 | 1.99 | 2.304 | 25.764 |
| 10 | 0.0 | 27.02 | 3.037 | 0.943 |
| 11 | 2.854 | 10.08 | 5.263 | 12.803 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.429 | 0.464 | 0.203 | -0.056 |
| 02 | -2.305 | -2.305 | -2.305 | 1.309 |
| 03 | -2.305 | -2.305 | 1.171 | -0.555 |
| 04 | -2.305 | -2.305 | 1.244 | -1.106 |
| 05 | -1.624 | -2.305 | 1.282 | -2.305 |
| 06 | -0.848 | -1.404 | -0.848 | 1.064 |
| 07 | -2.305 | -2.305 | 1.279 | -1.564 |
| 08 | -1.624 | -2.305 | 1.175 | -0.766 |
| 09 | -1.564 | -1.106 | -1.001 | 1.129 |
| 10 | -2.305 | 1.175 | -0.793 | -1.564 |
| 11 | -0.841 | 0.24 | -0.341 | 0.462 |