Model info
| Transcription factor | Gfi1b | ||||||||
| Model | GFI1B_MOUSE.H10DI.C | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | C | ||||||||
| Consensus | nRYWSWGATTKvnnnnnnnnnn | ||||||||
| wAUC | 0.825953473931337 | ||||||||
| Best AUC | 0.825953473931337 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 525 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | GFI1 factors{2.3.3.21} | ||||||||
| MGI | 1276578 | ||||||||
| EntrezGene | 14582 | ||||||||
| UniProt ID | GFI1B_MOUSE | ||||||||
| UniProt AC | O70237 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 24.821 | 9.268 | 90.639 | 3.03 | 27.547 | 7.834 | 26.652 | 15.775 | 29.514 | 16.657 | 87.331 | 13.678 | 6.944 | 10.464 | 121.99 | 7.859 |
| 02 | 2.033 | 76.102 | 9.651 | 1.04 | 5.853 | 30.573 | 0.884 | 6.912 | 22.846 | 257.846 | 16.757 | 29.161 | 0.914 | 36.598 | 2.828 | 0.0 |
| 03 | 15.94 | 1.812 | 0.884 | 13.01 | 137.352 | 39.695 | 7.761 | 216.312 | 3.886 | 15.665 | 0.0 | 10.57 | 3.407 | 11.755 | 3.844 | 18.108 |
| 04 | 0.0 | 70.767 | 88.612 | 1.206 | 0.935 | 42.19 | 21.868 | 3.933 | 0.0 | 5.73 | 6.76 | 0.0 | 2.767 | 56.453 | 185.003 | 13.777 |
| 05 | 0.935 | 0.0 | 0.9 | 1.868 | 77.785 | 8.826 | 0.0 | 88.529 | 168.564 | 2.153 | 7.479 | 124.048 | 0.928 | 1.069 | 2.032 | 14.887 |
| 06 | 0.0 | 1.944 | 245.417 | 0.85 | 0.0 | 0.0 | 10.978 | 1.069 | 0.0 | 0.0 | 10.411 | 0.0 | 0.0 | 0.0 | 229.331 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 0.0 | 1.944 | 0.0 | 0.0 | 0.0 | 378.075 | 31.75 | 86.313 | 0.0 | 0.0 | 0.85 | 1.069 | 0.0 |
| 08 | 0.921 | 9.039 | 6.699 | 363.36 | 0.0 | 4.736 | 0.892 | 26.972 | 0.0 | 9.649 | 2.745 | 74.987 | 0.0 | 0.0 | 0.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 0.921 | 0.0 | 0.0 | 0.0 | 23.423 | 0.959 | 0.0 | 0.0 | 9.377 | 3.892 | 0.884 | 1.213 | 459.331 |
| 10 | 1.85 | 0.0 | 2.161 | 0.841 | 0.0 | 0.884 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.213 | 22.261 | 53.598 | 131.647 | 285.546 |
| 11 | 2.836 | 14.519 | 5.834 | 0.921 | 21.909 | 20.622 | 6.308 | 5.644 | 25.159 | 47.228 | 42.316 | 19.105 | 64.059 | 86.976 | 101.053 | 35.511 |
| 12 | 23.272 | 35.38 | 30.881 | 24.431 | 42.406 | 41.537 | 13.954 | 71.448 | 36.775 | 33.996 | 29.098 | 55.641 | 13.021 | 17.725 | 13.8 | 16.636 |
| 13 | 25.225 | 20.706 | 58.595 | 10.948 | 33.617 | 36.807 | 12.312 | 45.901 | 24.051 | 16.609 | 31.204 | 15.868 | 16.102 | 42.289 | 55.337 | 54.43 |
| 14 | 18.093 | 8.861 | 45.533 | 26.507 | 37.005 | 23.497 | 7.749 | 48.159 | 11.507 | 36.959 | 81.327 | 27.656 | 14.251 | 36.949 | 40.59 | 35.356 |
| 15 | 13.864 | 10.252 | 39.438 | 17.303 | 14.349 | 33.028 | 14.248 | 44.641 | 38.019 | 46.281 | 41.688 | 49.211 | 13.519 | 39.911 | 40.54 | 43.708 |
| 16 | 27.208 | 9.645 | 29.266 | 13.632 | 24.271 | 48.04 | 8.761 | 48.4 | 31.18 | 36.433 | 38.552 | 29.75 | 8.122 | 40.549 | 57.184 | 49.008 |
| 17 | 23.098 | 11.029 | 37.743 | 18.911 | 29.98 | 44.123 | 11.165 | 49.4 | 33.617 | 37.194 | 27.958 | 34.994 | 9.761 | 29.498 | 49.335 | 52.195 |
| 18 | 10.318 | 29.196 | 36.209 | 20.733 | 28.074 | 38.465 | 13.955 | 41.35 | 12.333 | 42.768 | 42.684 | 28.415 | 19.104 | 30.197 | 74.994 | 31.204 |
| 19 | 16.452 | 14.353 | 22.983 | 16.04 | 44.158 | 48.232 | 18.365 | 29.871 | 37.807 | 48.05 | 39.993 | 41.993 | 13.42 | 35.328 | 47.656 | 25.298 |
| 20 | 26.667 | 23.938 | 53.307 | 7.925 | 30.718 | 35.175 | 15.532 | 64.539 | 14.667 | 36.255 | 41.656 | 36.419 | 6.808 | 21.06 | 54.158 | 31.176 |
| 21 | 21.55 | 22.36 | 21.798 | 13.152 | 37.91 | 32.694 | 3.841 | 41.982 | 32.929 | 46.242 | 48.965 | 36.517 | 8.567 | 46.221 | 59.522 | 25.75 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.227 | -1.187 | 1.057 | -2.225 | -0.124 | -1.347 | -0.157 | -0.672 | -0.056 | -0.619 | 1.02 | -0.811 | -1.462 | -1.07 | 1.353 | -1.345 |
| 02 | -2.57 | 0.883 | -1.148 | -3.098 | -1.623 | -0.022 | -3.213 | -1.466 | -0.309 | 2.099 | -0.613 | -0.068 | -3.19 | 0.156 | -2.286 | -4.4 |
| 03 | -0.661 | -2.666 | -3.213 | -0.859 | 1.471 | 0.237 | -1.356 | 1.924 | -2.002 | -0.678 | -4.4 | -1.06 | -2.121 | -0.958 | -2.012 | -0.537 |
| 04 | -4.4 | 0.81 | 1.034 | -2.988 | -3.174 | 0.297 | -0.352 | -1.991 | -4.4 | -1.643 | -1.488 | -4.4 | -2.305 | 0.586 | 1.768 | -0.804 |
| 05 | -3.174 | -4.4 | -3.201 | -2.641 | 0.905 | -1.234 | -4.4 | 1.033 | 1.675 | -2.522 | -1.392 | 1.369 | -3.18 | -3.078 | -2.57 | -0.728 |
| 06 | -4.4 | -2.607 | 2.05 | -3.241 | -4.4 | -4.4 | -1.024 | -3.078 | -4.4 | -4.4 | -1.075 | -4.4 | -4.4 | -4.4 | 1.982 | -4.4 |
| 07 | -4.4 | -4.4 | -4.4 | -4.4 | -2.607 | -4.4 | -4.4 | -4.4 | 2.482 | 0.016 | 1.008 | -4.4 | -4.4 | -3.241 | -3.078 | -4.4 |
| 08 | -3.185 | -1.211 | -1.496 | 2.442 | -4.4 | -1.82 | -3.207 | -0.145 | -4.4 | -1.148 | -2.312 | 0.868 | -4.4 | -4.4 | -4.4 | -4.4 |
| 09 | -4.4 | -4.4 | -4.4 | -3.185 | -4.4 | -4.4 | -4.4 | -0.284 | -3.156 | -4.4 | -4.4 | -1.176 | -2.0 | -3.213 | -2.984 | 2.676 |
| 10 | -2.649 | -4.4 | -2.519 | -3.248 | -4.4 | -3.213 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.984 | -0.334 | 0.534 | 1.429 | 2.201 |
| 11 | -2.283 | -0.753 | -1.626 | -3.185 | -0.35 | -0.409 | -1.553 | -1.657 | -0.214 | 0.409 | 0.3 | -0.484 | 0.711 | 1.016 | 1.165 | 0.126 |
| 12 | -0.291 | 0.123 | -0.012 | -0.243 | 0.302 | 0.282 | -0.791 | 0.82 | 0.161 | 0.083 | -0.07 | 0.572 | -0.858 | -0.558 | -0.802 | -0.62 |
| 13 | -0.211 | -0.405 | 0.623 | -1.026 | 0.072 | 0.162 | -0.913 | 0.381 | -0.258 | -0.621 | -0.001 | -0.666 | -0.652 | 0.299 | 0.566 | 0.55 |
| 14 | -0.538 | -1.23 | 0.373 | -0.162 | 0.167 | -0.281 | -1.358 | 0.428 | -0.978 | 0.166 | 0.949 | -0.121 | -0.771 | 0.166 | 0.259 | 0.122 |
| 15 | -0.797 | -1.09 | 0.23 | -0.581 | -0.764 | 0.055 | -0.771 | 0.353 | 0.194 | 0.389 | 0.285 | 0.45 | -0.822 | 0.242 | 0.257 | 0.332 |
| 16 | -0.137 | -1.148 | -0.065 | -0.814 | -0.249 | 0.426 | -1.241 | 0.433 | -0.002 | 0.152 | 0.208 | -0.049 | -1.313 | 0.258 | 0.599 | 0.445 |
| 17 | -0.298 | -1.019 | 0.187 | -0.494 | -0.041 | 0.341 | -1.007 | 0.453 | 0.072 | 0.172 | -0.11 | 0.112 | -1.137 | -0.057 | 0.452 | 0.508 |
| 18 | -1.084 | -0.067 | 0.146 | -0.404 | -0.106 | 0.205 | -0.791 | 0.277 | -0.911 | 0.31 | 0.309 | -0.094 | -0.484 | -0.034 | 0.868 | -0.001 |
| 19 | -0.631 | -0.764 | -0.303 | -0.655 | 0.342 | 0.43 | -0.523 | -0.045 | 0.188 | 0.426 | 0.244 | 0.292 | -0.829 | 0.121 | 0.418 | -0.208 |
| 20 | -0.156 | -0.263 | 0.529 | -1.337 | -0.017 | 0.117 | -0.687 | 0.719 | -0.743 | 0.147 | 0.284 | 0.151 | -1.481 | -0.389 | 0.545 | -0.002 |
| 21 | -0.366 | -0.33 | -0.355 | -0.849 | 0.191 | 0.045 | -2.012 | 0.292 | 0.052 | 0.388 | 0.445 | 0.154 | -1.262 | 0.387 | 0.638 | -0.191 |